G814621


Basic Information

Item Value
gene id G814621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50422643 ~ 50422974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU926670
TTGTAAAAGAGCTTTATACATGAAAACATAGCACTGTATCACCCTACGTGACAACAAAGAGGGCCAACtaactttctggtagagaatgcagggATGAGTACTAAAACTGTCGCCAGTAATAAAGTGCAGTGTGCTATGTTAAACTGCATCTAACggctttaatgaagtggcagAGTGGACGGAGTTTCTAAAAATTGCGTTGTTTAGAAGGACCATATGGACTGGTCTAGGCCAATTGAGGAAAGCTTCTGAATTAGCAGTGAGTAATCAACAGTATTGAAGGCCTTTGACAGGTTAATGAAGAGGACAGCACAATGTTGCCTTTTATCCAC

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU926670 True 332 lncRNA 0.41 1 50422643 50422974

Neighbor

gene id symbol gene type direction distance location
fam217b LOC106572066 coding upstream 14273 50402564 ~ 50408370 (+)
LOC110532305 LOC106572068 coding upstream 63280 50224844 ~ 50359369 (+)
LOC110532304 LOC106566492 coding upstream 217637 50138196 ~ 50205006 (+)
si:dkey-8e10.3 LOC106572072 coding upstream 453912 49956841 ~ 49968731 (+)
LOC118966067 NA coding upstream 504786 49882156 ~ 49917857 (+)
LOC118966068 NA coding downstream 472 50423446 ~ 50428094 (+)
si:dkey-178k16.1 LOC106572064 coding downstream 22578 50445552 ~ 50557497 (+)
cntn3a.2 LOC106572060 coding downstream 542743 50965717 ~ 51041645 (+)
exosc10 exosc10 coding downstream 621441 51044415 ~ 51056932 (+)
srm srm coding downstream 638098 51061072 ~ 51067904 (+)
G814602 NA non-coding upstream 42407 50380024 ~ 50380236 (+)
G814594 NA non-coding upstream 48874 50373562 ~ 50373769 (+)
G814590 NA non-coding upstream 50267 50365798 ~ 50372376 (+)
G814494 NA non-coding upstream 202839 50219592 ~ 50219804 (+)
G814624 NA non-coding downstream 8916 50431890 ~ 50432090 (+)
G814626 NA non-coding downstream 10588 50433562 ~ 50433778 (+)
G814628 NA non-coding downstream 11749 50434723 ~ 50434938 (+)
G814631 NA non-coding downstream 14063 50437037 ~ 50437266 (+)
G814639 NA non-coding downstream 50441 50473415 ~ 50565395 (+)
G813139 NA other upstream 1307025 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 1415933 48962187 ~ 49006710 (+)
G813071 NA other upstream 1462652 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1852050 48545454 ~ 48570593 (+)
G812143 NA other upstream 2440342 47982001 ~ 47982301 (+)
G815428 NA other downstream 373240 50796214 ~ 50800381 (+)
G815610 NA other downstream 655473 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 922398 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 1900297 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2303447 52692676 ~ 52734929 (+)

Expression


Co-expression Network