G815428


Basic Information

Item Value
gene id G815428
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50796214 ~ 50800381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU927553
CCAAACGATCAGACTGAGAATTTCAATGTCGAAAGGAGTCTCAGAGAAAtaaatgacaaaaaatatatttggagttattttcatgaaataaacaaacacagtgatgtattagacatacagtgatgatttaaaaatacaattaaaaacccTTTTAACATTGTGAAAATTAAATATACAAAAGTAGGCACAAGTAATTATGTAAAGGTAATCAACGAGGGGATATGCAGTCTATAGAAAATAATACACAACGTGGAAGGTGTGTGCCAAGGTGCGCAGCAGAGTGGCACTAACCTTCcacggagttgcattattttccatagaatgCATAGAGCTCAGGGTTGATTATCCCACTTATACCACGGCTATAATGCCTTTGTCTCTTTTCGACTCCTGACATGTTCATTACTATGAGACAGCTGGAGatagaatttgaatattgaaacaatgttgcaaatgtcagacagcaaggtttatacaaatctccgctgttgaaaacaaaatgttagtctaaaagaaatgtgagataatgtagtggagatcaagtttataaattgcttggcagggctgacgagacagtggattgagcagtcagatggaacagagtaaatacagttgtggccaaaggttttgagaatgacacaaatattaattttcacaaagtctgctgcctcagcttgtatgatggcaatttacatatactccagaatgttatgaagagtggtcagatgaattgcaattaattgcaaagtccctctttaccatgtaaatgaactgaatccccaaaaacagttatactgcatttcagccctgccacaaaaggaccagctgacatcatgtcagtgattattttgttaacacaggtgtgagtgttgacgaggacaaggctggagatcactctgtcatgctgattgagttcaaataacagactggaagctccAAAAAGAggatggtgcttggaatcattgttcttcctctgtcaaccatgtttAACTGCAAGGAAACaggtgccgtcatcattgctttgcacaaaaatggcttcacgggcaaggatattgctgccagtaagactgcacctaaatcaactatttatcggatcatccagaacttcaaggagagcggttcaattgttgtgaagaaggcttcagggcgcccaagaaagtccagcaagcgccaggaccgtctcctaaatttgattcagctgtgggatcggggtaCCACCAGAGCTTGCTTAGGAattgcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaagacttttggaggatggcctggtgtcaagaagggcagcaaagaagccacttctctccaggaaaaacattagggacagactgataatctgcaaaaggtacagggattggactgctgatgactggggtaaagtaattttctttgatgaatcccctttccgattgtttggggcatacggaaaaaagcttgtccggagaagacaaggtgagcgctaccatcagccctgtgtcatgccaacagtaaagcatcctaaaaccattcatgtgtggggttgtttctcagccaagggagtaggctcactcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacaacacagagcaacttctcccaaccatccaggaacagtttggtgacgaacaatgccttttccagcatgatggaccttgagtccatggccaggaatctccccagaccttaatcccattgagaacttgtggacaatcctcaagaggcgggtggacaaacaaaaacccacaagcattgattatgcaagaatgggctgccataagtcaggatgtggcccagaagttaattgacagcatgccatggtggattgcagaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttcatctaattgtcaataaaagcctttgacacttatcaAATGCTTATAATTATACTTCAGTTTTCCAtattaacatctgacaaaaatatctaaagacactgaagcagcaaactttgtagaaattaatatttgtgtcattctcaaaacttttggccacgaatataggcattttaacatcatagatttagccggtggtaaatGGTGGAATAGACACCATTtacggttttaaccaatcagcattcacgaTTAGACCTTGTAGCCCACGCTATATTACCTCGGTAGAATTCGATGGctatagttcattcttacatgttcggtttgagctgcttttgaaagcaaaagtttaataaaaaaatgtataccagcaaatgaacacatttctagtggcaaATGTGCTAAATTATAGCCCTGGTATGAAAGGGATTATCAACTCTGGGTTTTCTGGAAAATAATCCGTGGAACACAACTTCCAGGTccttcattattttccatagaacgcaGAGCAACtcattgattatcccttacataatACACACTCTAGAATACAAGCCAATCAtaaacaagtattcaacaataCCGTGGTATAAAAAATGTTTATGCCTCATATCTGTTGACCTTTTCTAAGAAAGTAAAAACATAAGAAATCATGCATCGTTATTAATGATATATGTGTCTGCTGTCTACCTTTTCTTTTTAaagatatatatagtgtatttacagtaacagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataagaaagacatctaaactatgaaataacacatggaaaaaGTAGCAACCAAAACATTGTTAAATCAAAATGCAAAAGTGCCTTGTTGaaaattaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggcgtGGTGTGACGTGgtaaggttggacccaggtgcagagaagagaccagaaaaaacaacaaacactaagtATCGAAAATTCACTCAGGAAACAAATGCACAcggtaaacaattcaagcttctgcaaaggaccacagaaaacacacctctttaAGCAGGGACACAATGATGAAATAATAAGACACACCTGCCTCCCTCTGGTGCCAGGAGGAACCATGacaggtggtatacagaagatagcccatattaagtccatattatggcaagcacagctcaaattagcaaagagagacaacagtccatcattactttaagacataaaggtcagtcaaaactgaacatttcaagaactttgaaagtttattcaagtgcaagttcaaccatcaagcgctataatgaaattggctctcacgaggacctccacaagaaaggaagacccagagttacctctgcagcagaggataagttcattagagttaccagcctcagatagcAGCCTAAATAAAAGtcacagacacatcaactgttcagaggagaatcagtgtgaatcaggccttcatgatcgaattgctgtaaagaaaccactactaaaggacaccaataacaataaaagacttgcttgggccaagaaacacgagcaatggaaattagaccggcggatatctgtcctttggtctgatgagtccaaattggaggtttttggttccaaccgccatgttttgagacacagagtaggtgaacagatgacctccacatgtgtgattcccaccgtgaagcattgaggaggaggtgtgatggtgctttgtttgtgacacagtcagtgatttacttagaattcaaggcacacttaaacagcatggctaccattgcattctgcagcgatacgccatccaatctggtttgcgcttagtgggactatattttgtttttcaacagcacaGTGGCctaacacacatccaggctgtgtaagggctgtttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcaccgtacctcaacccaattgagatggtttgggatgagttggaccacagactgaaggaaaagcagccaacaagtgctcaacatatgtgggaactccttcaaagctgttggaaaagcattccaggtgaagctggttgagagaatgcaaagaacgtgcaagctgtcatcaaggaaaagggtggctactttgaagcatctaaaatagaaaatataatttgatttgtttaacagttttttggttactacagtacatgttt
>TU927551
tattagacatacagtgatgatttaaaaatacaattaaaaacccTTTTAACATTGTGAAAATTAAATATACAAAAGTAGGCACAAGTAATTATGTAAAGGTAATCAACGAGGGGATATGCAGTCTATAGAAAATAATACACAACGTGGAAGGTGTGTGCCAAGGTGCGCAGCAGAGTGGCACTAACCTTCcacggagttgcattattttccatagaatgCATAGAGCTCAGGGTTGATTATCCCACTTATACCACGGCTATAATGCCTTTGTCTCTTTTCGACTCCTGACATGTTCATTACTATGAGACAGCTGGAGatagaatttgaatattgaaacaatgttgcaaatgtcagacagcaaggtttatacaaatctccgctgttgaaaacaaaatgttagtctaaaagaaatgtgagataatgtagtggagatcaagtttataaattgcttggcagggctgacgagacagtggattgagcagtcagatggaacagagtaaatacagttgtggccaaaggttttgagaatgacacaaatattaattttcacaaagtctgctgcctcagcttgtatgatggcaatttacatatactccagaatgttatgaagagtggtcagatgaattgcaattaattgcaaagtccctctttaccatgtaaatgaactgaatccccaaaaacagttatactgcatttcagccctgccacaaaaggaccagctgacatcatgtcagtgattattttgttaacacaggtgtgagtgttgacgaggacaaggctggagatcactctgtcatgctgattgagttcaaataacagactggaagctccAAAAAGAggatggtgcttggaatcattgttcttcctctgtcaaccatgtttAACTGCAAGGAAACaggtgccgtcatcattgctttgcacaaaaatggcttcacgggcaaggatattgctgccagtaagactgcacctaaatcaactatttatcggatcatccagaacttcaaggagagcggttcaattgttgtgaagaaggcttcagggcgcccaagaaagtccagcaagcgccaggaccgtctcctaaatttgattcagctgtgggatcggggtaCCACCAGAGCTTGCTTAGGAattgcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaagacttttggaggatggcctggtgtcaagaagggcagcaaagaagccacttctctccaggaaaaacattagggacagactgataatctgcaaaaggtacagggattggactgctgatgactggggtaaagtaattttctttgatgaatcccctttccgattgtttggggcatacggaaaaaagcttgtccggagaagacaaggtgagcgctaccatcagccctgtgtcatgccaacagtaaagcatcctaaaaccattcatgtgtggggttgtttctcagccaagggagtaggctcactcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacaacacagagcaacttctcccaaccatccaggaacagtttggtgacgaacaatgccttttccagcatgatggaccttgagtccatggccaggaatctccccagaccttaatcccattgagaacttgtggacaatcctcaagaggcgggtggacaaacaaaaacccacaagcattgattatgcaagaatgggctgccataagtcaggatgtggcccagaagttaattgacagcatgccatggtggattgcagaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttcatctaattgtcaataaaagcctttgacacttatcaAATGCTTATAATTATACTTCAGTTTTCCAtattaacatctgacaaaaatatctaaagacactgaagcagcaaactttgtagaaattaatatttgtgtcattctcaaaacttttggccacgaatataggcattttaacatcatagatttagccggtggtaaatGGTGGAATAGACACCATTtacggttttaaccaatcagcattcacgaTTAGACCTTGTAGCCCACGCTATATTACCTCGGTAGAATTCGATGGctatagttcattcttacatgttcggtttgagctgcttttgaaagcaaaagtttaataaaaaaatgtataccagcaaatgaacacatttctagtggcaaATGTGCTAAATTATAGCCCTGGTATGAAAGGGATTATCAACTCTGGGTTTTCTGGAAAATAATCCGTGGAACACAACTTCCAGGTccttcattattttccatagaacgcaGAGCAACtcattgattatcccttacataatACACACTCTAGAATACAAGCCAATCAtaaacaagtattcaacaataCCGTGGTATAAAAAATGTTTATGCCTCATATCTGTTGACCTTTTCTAAGAAAGTAAAAACATAAGAAATCATGCATCGTTATTAATGATATATGTGTCTGCTGTCTACCTTTTCTTTTTAaagatatatatagtgtatttacagtaacagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataagaaagacatctaaactatgaaataacacatggaaaaaGTAGCAACCAAAACATTGTTAAATCAAAATGCAAAAGTGCCTTGTTGaaaattaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggcgtGGTGTGACGTGgtaaggttggacccaggtgcagagaagagaccagaaaaaacaacaaacactaagtATCGAAAATTCACTCAGGAAACAAATGCACAcggtaaacaattcaagcttctgcaaaggaccacagaaaacacacctctttaAGCAGGGACACAATGATGAAATAATAAGACACACCTGCCTCCCTCTGGTGCCAGGAGGAACCATGacaggtggtatacagaagatagcccatattaagtccatattatggcaagcacagctcaaattagcaaagagagacaacagtccatcattactttaagacataaaggtcagtcaaaactgaacatttcaagaactttgaaagtttattcaagtgcaagttcaaccatcaagcgctataatgaaattggctctcacgaggacctccacaagaaaggaagacccagagttacctctgcagcagaggataagttcattagagttaccagcctcagatagcAGCCTAAATAAAAGtcacagacacatcaactgttcagaggagaatcagtgtgaatcaggccttcatgatcgaattgctgtaaagaaaccactactaaaggacaccaataacaataaaagacttgcttgggccaagaaacacgagcaatggaaattagaccggcggatatctgtcctttggtctgatgagtccaaattggaggtttttggttccaaccgccatgttttgagacacagagtaggtgaacagatgacctccacatgtgtgattcccaccgtgaagcattgaggaggaggtgtgatggtgctttgtttgtgacacagtcagtgatttacttagaattcaaggcacacttaaacagcatggctaccattgcattctgcagcgatacgccatccaatctggtttgcgcttagtgggactatattttgtttttcaacagcacaGTGGCctaacacacatccaggctgtgtaagggctgtttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcaccgtacctcaacccaattgagatggtttgggatgagttggaccacagactgaaggaaaagcagccaacaagtgctcaacatatgtgggaactccttcaaagctgttggaaaagcattccaggtgaagctggttgagagaatgcaaagaacgtgcaagctgtcatcaaggaaaagggtggctactttgaagcatctaaaatagaaaatataatttgatttgtttaacagttttttggttactacagtacatgttt

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU927553 False 4168 TUCP 0.40 1 50796214 50800381
TU927551 True 4062 TUCP 0.41 1 50796320 50800381

Neighbor

gene id symbol gene type direction distance location
si:dkey-178k16.1 LOC106572064 coding upstream 238717 50445552 ~ 50557497 (+)
LOC118966068 NA coding upstream 368120 50423446 ~ 50428094 (+)
fam217b LOC106572066 coding upstream 387844 50402564 ~ 50408370 (+)
LOC110532305 LOC106572068 coding upstream 436851 50224844 ~ 50359369 (+)
LOC110532304 LOC106566492 coding upstream 591208 50138196 ~ 50205006 (+)
cntn3a.2 LOC106572060 coding downstream 165336 50965717 ~ 51041645 (+)
exosc10 exosc10 coding downstream 244034 51044415 ~ 51056932 (+)
srm srm coding downstream 260691 51061072 ~ 51067904 (+)
cort LOC106572313 coding downstream 305946 51106327 ~ 51107746 (+)
LOC110531197 NA coding downstream 324754 51125135 ~ 51127512 (+)
G815427 NA non-coding upstream 50 50795675 ~ 50796164 (+)
G815426 NA non-coding upstream 781 50795214 ~ 50795433 (+)
G815423 NA non-coding upstream 3243 50792739 ~ 50792971 (+)
G815407 NA non-coding upstream 22902 50773112 ~ 50773312 (+)
G815404 NA non-coding upstream 28002 50767984 ~ 50768212 (+)
G815509 NA non-coding downstream 99796 50900177 ~ 50900647 (+)
G815516 NA non-coding downstream 111963 50912344 ~ 50912554 (+)
G815517 NA non-coding downstream 113543 50913924 ~ 50914154 (+)
G815526 NA non-coding downstream 120485 50920866 ~ 50921079 (+)
G815528 NA non-coding downstream 122394 50922775 ~ 50923001 (+)
G813139 NA other upstream 1680596 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 1789504 48962187 ~ 49006710 (+)
G813071 NA other upstream 1836223 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 2225621 48545454 ~ 48570593 (+)
G812143 NA other upstream 2813913 47982001 ~ 47982301 (+)
G815610 NA other downstream 278066 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 544991 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 1522890 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 1926040 52692676 ~ 52734929 (+)
G819897 NA other downstream 3926490 54726871 ~ 54727376 (+)

Expression


Co-expression Network