XLOC_027178 (vhll)


Basic Information

Item Value
gene id XLOC_027178
gene name vhll
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12966640 ~ 12968021 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053562
ATTACAGCGACACTGCATCTGTCAGAGCAGCAGCACCATGGCTGAGCAGGAAGCGCCCGCACCTCTAAAATCTCTCAACTCCGATGATCCAACATACATTTCTTTTATTAACAAATCCAACAGAACAGCAGAAGCATGGTGGCTGAACTTCTCGGGAAAGCCGGTGTCTTACGGCGACATAAATCCAGGGAAATCTCTTCAGATGAACACTTATCTGACTCATCCATGGATGTTCAGAGCATCTGATGGAGCTAAACTGCTGGTTAGCTTCAGTGAAGTTTACTTTCCTGCTCCTGCGCAGTATGATGATTACGGGCACCCGCATTTCCAGGCGGTCTACGTCACTACTCCAAtGTATTCATTACAAGAATGCTGCCTGCGGCTGATCAGGAGTTTGGTGAGAAAACAAGACATCTGCAAGCTGGAAATACCTGAGGGTTTGAGACAGGACATCAGGCGCGCGCCTGATTTACTGAGAGACATCCAGACATTATCCGCCGCGAGAGATCTGTGAAGGCTACAAACAGAGCCATTTCTCTC

Function

symbol description
vhll Predicted to be involved in protein ubiquitination. Predicted to be part of VCB complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including pancreatic cancer (multiple); pheochromocytoma; polycythemia (multiple); renal cell carcinoma; and von Hippel-Lindau disease. Orthologous to human VHLL (VHL like) and VHL (von Hippel-Lindau tumor suppressor).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0030891 VCB complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-78 Predicted to be involved in protein ubiquitination. Predicted to be part of VCB complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including pancreatic cancer (multiple); pheochromocytoma; polycythemia (multiple); renal cell carcinoma; and von Hippel-Lindau disease. Orthologous to human VHLL (VHL like) and VHL (von Hippel-Lindau tumor suppressor).

Ensembl:

ensembl_id ENSDARG00000078613

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053562 True 540 mRNA 0.48 3 12966640 12968021

Neighbor

gene id symbol gene type direction distance location
XLOC_027177 wif1 coding upstream 9922 12931763 ~ 12956718 (+)
XLOC_027176 NA coding upstream 147263 12813200 ~ 12819377 (+)
XLOC_027175 NA coding upstream 211438 12752554 ~ 12755202 (+)
XLOC_027174 AL954848.1 coding upstream 242236 12702440 ~ 12724404 (+)
XLOC_027173 lmo3 coding upstream 287347 12612145 ~ 12679293 (+)
XLOC_027179 NA coding downstream 11491 12979512 ~ 12980325 (+)
XLOC_027180 BX119963.3 coding downstream 11632 12979653 ~ 12998711 (+)
XLOC_027181 NA coding downstream 12675 12980696 ~ 12985047 (+)
XLOC_027182 NA coding downstream 29099 12997120 ~ 13024021 (+)
XLOC_027183 NA coding downstream 210137 13178158 ~ 13197865 (+)
XLOC_027166 NA non-coding upstream 901277 12063991 ~ 12065363 (+)
XLOC_027165 NA non-coding upstream 913970 12039649 ~ 12052670 (+)
XLOC_027162 NA non-coding upstream 1015714 11946875 ~ 11950926 (+)
XLOC_027184 BX470116.1 non-coding downstream 302771 13270792 ~ 13274635 (+)

Expression


Co-expression Network