XLOC_027179


Basic Information

Item Value
gene id XLOC_027179
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12979512 ~ 12980325 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057652
GGTGGGCGCTCTGTATGACGTCACTCAGACGAGACGCTTTGCTGATCTCGAGTGTCACAAAAGAGATTAAAAGTGCGATGATTGACGACTTTACAGAGGATGACCTGCCCTTGTAGAATTCTATGCGGTTAGCATTTCTGAGTTGAAATCACCCGGGTTTGGTGAGTTTACAACAAAATGATGTTCAGTCGGGTTGAATTGAGcgtttatgttttattaatgtgcTGAAGAGTATGTTTTTAAATGAGAGTATACCTATATTACAGTTCGGAAAGTATTTTGAATGTTCTATCATGTGAACTGAAGAAGTTCTGTTatgtgctaaaatgctaaccaGCGCTGCATTATCACACATGAATGTCATATTTGCACATTAAGGGTCAAAAAACACTCCTCCAGTTGTATTTTAAAACCACTTGTAGTTCATGTTGAATTCCTTTTAAGCTGTGATGTGTATTATAGTGATGTAAATTATCTGTGATATTTGTGATCCTGTTGTGTATGCCTTATTGAACATCACATCACAGAGAATTGCATTACAGCACCACCAAAAGACTTTGTACATTTGTGGGATTCATTGTGGGAATCTAAATATAGAGAAACAGAATTTAAATACATGTTAGTTTAcaaatagaatttaaatatttaatagtataaaaataagacttaaatatattttagttaaacTAAATGTATATACTTAAGTTAAAATGAATATAAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057652 True 721 lncRNA 0.33 2 12979512 12980325

Neighbor

gene id symbol gene type direction distance location
XLOC_027178 vhll coding upstream 11491 12966640 ~ 12968021 (+)
XLOC_027177 wif1 coding upstream 22794 12931763 ~ 12956718 (+)
XLOC_027176 NA coding upstream 160135 12813200 ~ 12819377 (+)
XLOC_027175 NA coding upstream 224310 12752554 ~ 12755202 (+)
XLOC_027174 AL954848.1 coding upstream 255108 12702440 ~ 12724404 (+)
XLOC_027181 NA coding downstream 371 12980696 ~ 12985047 (+)
XLOC_027182 NA coding downstream 16795 12997120 ~ 13024021 (+)
XLOC_027183 NA coding downstream 197833 13178158 ~ 13197865 (+)
XLOC_027184 BX470116.1 coding downstream 290467 13270792 ~ 13274635 (+)
XLOC_027185 cand1 coding downstream 431705 13412030 ~ 13425447 (+)
XLOC_027166 NA non-coding upstream 914149 12063991 ~ 12065363 (+)
XLOC_027165 NA non-coding upstream 926842 12039649 ~ 12052670 (+)
XLOC_027162 NA non-coding upstream 1028586 11946875 ~ 11950926 (+)
XLOC_027188 NA non-coding downstream 488266 13468591 ~ 13469897 (+)

Expression


Co-expression Network