G815552


Basic Information

Item Value
gene id G815552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50953753 ~ 50954424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU927681
ctcgagagcggttcacaccgtTCACATCCTAAGAATAATGCTGAACTGAAACAATTTTGTGAagatgaatggtccaaaattcctcctgattgttgtgcaggtctgatccacaaatacagaaaatgtttggttgagtttattgctgccaaaggagggtcaaccagttattaaatccaagggttcacatactttttccaccctacactgtgaatgtttacacggtgtgttcaataaagacatgaaaacgtataattgtttgtgtgttattagtttaagcagactgtgtttgtctattgttgtgacttaaaaTTTGATATGATCTTCAtctatgaccaatttatgcagaaatccaggtaattccaaagggttcacatactttttcttgccactgtagaatATCCGAATGGGATAATTATGACTGGGATTTATCAGTACTTTGGTACAGTAGCAGTGTCTATACAATGTATACTCCAGTCGATACAACATAGCTGATTAAATATATTATACCTGCTATATCATTGGTGCAATGATGCTGTTGTTAAGTTGAAGATTGGGTTGTTCCACCAATTGAGTACCTTTTGGGTGTAACTTTGTAAACCAAAATGTGttatttcacctaattttaacattctgtcataaagcgcacatgttcaacttaataaataAATcaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU927681 True 672 lncRNA 0.35 1 50953753 50954424

Neighbor

gene id symbol gene type direction distance location
si:dkey-178k16.1 LOC106572064 coding upstream 396256 50445552 ~ 50557497 (+)
LOC118966068 NA coding upstream 525659 50423446 ~ 50428094 (+)
fam217b LOC106572066 coding upstream 545383 50402564 ~ 50408370 (+)
LOC110532305 LOC106572068 coding upstream 594390 50224844 ~ 50359369 (+)
LOC110532304 LOC106566492 coding upstream 748747 50138196 ~ 50205006 (+)
cntn3a.2 LOC106572060 coding downstream 11293 50965717 ~ 51041645 (+)
exosc10 exosc10 coding downstream 89991 51044415 ~ 51056932 (+)
srm srm coding downstream 106648 51061072 ~ 51067904 (+)
cort LOC106572313 coding downstream 151903 51106327 ~ 51107746 (+)
LOC110531197 NA coding downstream 170711 51125135 ~ 51127512 (+)
G815543 NA non-coding upstream 7998 50945412 ~ 50945755 (+)
G815536 NA non-coding upstream 15536 50938008 ~ 50938217 (+)
G815528 NA non-coding upstream 30752 50922775 ~ 50923001 (+)
G815526 NA non-coding upstream 32674 50920866 ~ 50921079 (+)
G815517 NA non-coding upstream 39599 50913924 ~ 50914154 (+)
G815561 NA non-coding downstream 52934 51007358 ~ 51069498 (+)
G815580 NA non-coding downstream 60883 51015307 ~ 51016781 (+)
G815611 NA non-coding downstream 125132 51079556 ~ 51088643 (+)
G815629 NA non-coding downstream 142938 51097362 ~ 51097596 (+)
G815630 NA non-coding downstream 143355 51097779 ~ 51098009 (+)
G815428 NA other upstream 153372 50796214 ~ 50800381 (+)
G813139 NA other upstream 1838135 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 1947043 48962187 ~ 49006710 (+)
G813071 NA other upstream 1993762 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 2383160 48545454 ~ 48570593 (+)
G815610 NA other downstream 124023 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 390948 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 1368847 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 1771997 52692676 ~ 52734929 (+)
G819897 NA other downstream 3772447 54726871 ~ 54727376 (+)

Expression


Co-expression Network