Gene
RNA
| Item | Value |
|---|---|
| gene id | G815768 |
| gene name | casz1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 51348231 ~ 51350203 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| casz1 | Predicted to enable metal ion binding activity. Predicted to be involved in regulation of neuron differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; cardiovascular system; hindbrain neural plate; musculature system; and nervous system. Orthologous to human CASZ1 (castor zinc finger 1). |
| description |
|---|
| PREDICTED: zinc finger protein castor homolog 1 isoform X6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU927909 | True | 486 | lncRNA | 0.51 | 3 | 51348231 | 51350203 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pex14 | pex14 | coding | upstream | 28849 | 51202733 ~ 51319382 (+) |
| masp2 | masp2 | coding | upstream | 166497 | 51173762 ~ 51181734 (+) |
| LOC110531197 | NA | coding | upstream | 220719 | 51125135 ~ 51127512 (+) |
| cort | LOC106572313 | coding | upstream | 240485 | 51106327 ~ 51107746 (+) |
| srm | srm | coding | upstream | 280327 | 51061072 ~ 51067904 (+) |
| tardbpl | tardbp | coding | downstream | 355663 | 51705866 ~ 51710352 (+) |
| lzic | lzic | coding | downstream | 570943 | 51921146 ~ 51924442 (+) |
| LOC110532337 | LOC106572044 | coding | downstream | 823807 | 52174010 ~ 52176441 (+) |
| LOC110532339 | LOC107599000 | coding | downstream | 832025 | 52182228 ~ 52189437 (+) |
| si:dkey-6n6.1 | LOC106572038 | coding | downstream | 857023 | 52207226 ~ 52216054 (+) |
| G815696 | NA | non-coding | upstream | 15137 | 51331995 ~ 51333094 (+) |
| G815697 | NA | non-coding | upstream | 16803 | 51330847 ~ 51331428 (+) |
| G815695 | NA | non-coding | upstream | 21979 | 51325904 ~ 51326252 (+) |
| G815735 | NA | non-coding | upstream | 81153 | 51261373 ~ 51267078 (+) |
| G815734 | NA | non-coding | upstream | 83450 | 51258909 ~ 51264781 (+) |
| G816426 | NA | non-coding | downstream | 249256 | 51599459 ~ 51599793 (+) |
| G816427 | NA | non-coding | downstream | 249773 | 51599976 ~ 51600326 (+) |
| G816504 | NA | non-coding | downstream | 347960 | 51698163 ~ 51698389 (+) |
| G816505 | NA | non-coding | downstream | 350496 | 51700699 ~ 51700970 (+) |
| G816478 | pgd | non-coding | downstream | 377568 | 51727771 ~ 51737134 (+) |
| G815767 | casz1 | other | upstream | 1737 | 51345372 ~ 51346494 (+) |
| G815610 | NA | other | upstream | 269289 | 51078447 ~ 51078942 (+) |
| G815428 | NA | other | upstream | 547850 | 50796214 ~ 50800381 (+) |
| G813139 | NA | other | upstream | 2232613 | 49115137 ~ 49115618 (+) |
| G813074 | etbr2 | other | upstream | 2341521 | 48962187 ~ 49006710 (+) |
| LOC110532349 | LOC106591969 | other | downstream | 973068 | 52323001 ~ 52325924 (+) |
| LOC110532368 | LOC106572016 | other | downstream | 1376218 | 52692676 ~ 52734929 (+) |
| G819897 | NA | other | downstream | 3376668 | 54726871 ~ 54727376 (+) |
| G820665 | NA | other | downstream | 3883055 | 55233258 ~ 55233798 (+) |
| dlgap4a | dlgap4 | other | downstream | 4180834 | 55531033 ~ 55647541 (+) |
