G816478 (pgd)


Basic Information

Item Value
gene id G816478
gene name pgd
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51727771 ~ 51737134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU928633
GCCCAGCTGGCACATAACGTTTTTGTAATGTTCTGCAACGTTTTCACAACTTTGTAAAACATTTCCTTGCTAGCTGGGCATATGGGTGGGCCTATATGCTCCAGTATCCATTTAAATATGGTAGTTACATCATCGTCTTAGGGTCTTAAAGTCCACCCGCCTCCCCCTGCATCCAAACACACACTACCCTTAGCTAACATCCACACGTGACAAGACCGATTTAATCTCTTTCACTTTGACATATGTTCTTGTAGGGGGAGCTTTGTGCCCTGAAGAGAGTGGTGTGTTGTGTCACTGAGTTGCTCCTTAAGCATGGTAAGAGGAGACGCTTCCACCGTGGCATCCAATGTGTTGTTACCTGGAGGAGGTTAGCCGGGAGCATGTCGTGTCTGTAGCCGTCGTAGAAGGACAAGGCGGTGGTGAAACAAGGCATAGGGATCCCCTGCTGCACTCCAATGCTGACCGCCCGGCGCCACGAGTCCTACAGCCATGACAAAGACAGGCACACGCATGAGCAAAAGCACACAGAATAATCTCTAACCCTCTGGGATTTGGGAACATCATGgtgaatacatttatttcaagTTTATTAGACAAGATCATTGCAAAGCAATATGACATGAACACTTATAATCACATAATTAGATAGCTACAAGGGGTTTATTTATTTAAACGCAGAGACCAAATACAGTATAACTTTGTAAATGTTGCCCTGTCTTGGGCCATACCATGTACAACACTGCGATTAAAATGCAGTATGAATAAGAAGCCCATGACATGTCATCTatattacaaaaacacatttccaccAATAACTAACAGCCCCAATATATTCTCCTTTTGTGGGCTGGGAAATGGTATGATGTATCAATATAGCGGTGGGGTGGTAACAGCCGTGAGTGTGTGTTGCTAACGTGGCCACAAAGGGGTTGGGCTTTCTTTCATCACTTCCTACTCCCCTAGGTGCAGATTGAGGATCAgcctcccctcccccaatcctaaacttaacccttatgGGGGGAAAATGCTAAAAATGACCCAAGTTCAGCATTTTAGAGCAGATTAACCCTACTCTCCTTTACTGTACCTGGCAGTCCTGTACGGCATTACTGAAGAAGGTATCCAACAGCAGATTCTGCAGCTCAGCATCCCTGTCAAAGGCCTCTTTGATCTTCCCCAGGAAAACACTTCGGATGATGCAGCCTCCCCTCCACATCAGGGCAATGGCGCCATAGTTTAGGGACCAGCCAAACTCTTTGGCCGCCTGTCTGAGCAGCATGAAGCCCTGGGCATACGAGATGATCTTGGAGGCATAGAGGGCCTTTCTGATGTCCTCAAGGAACGAAGCCTTGTCCCCGTTGAACTTGGCTCCCTGGGGCCCGGCCAGGCTCCTGCTGGCCTCCACTCTCTCGTCCTTCAGGGCCGACAGACATCTGGCAAAGACAGCCTCGCCGATCAGGGTGACTGGTGTGCCGTACTCGAGAGCCGAAATAGCCGTCCACTTCCCTGTGCCTTTCTGCCCGGCGGCGTCCCGGATCTTAGGCAGCAGGTGAGTGCCGTCTGTGTCTCTGAACTTGAGGATGCCAGCTGTGATCTCGATAAGGAAGGAGTCCAACTCCGTTTTGTTCCAGTCTTCAAAAGCCTATGGGAGACCCAAGAGCAGAAGTGAACCTGACAAACAGAATAATCAACTAAGA

Function

symbol description
pgd Predicted to enable NADP binding activity and phosphogluconate dehydrogenase (decarboxylating) activity. Predicted to be involved in D-gluconate catabolic process and pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within D-gluconate metabolic process and pentose-phosphate shunt. Predicted to be active in cytosol. Is expressed in several structures, including axis; chordo neural hinge; digestive system; sensory system; and solid lens vesicle. Orthologous to human PGD (phosphogluconate dehydrogenase).

NR:

description
6-phosphogluconate dehydrogenase, decarboxylating

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU928633 True 1697 lncRNA 0.49 4 51727771 51737134

Neighbor

gene id symbol gene type direction distance location
tardbpl tardbp coding upstream 17419 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 408389 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 546037 51173762 ~ 51181734 (+)
LOC110531197 NA coding upstream 600259 51125135 ~ 51127512 (+)
cort LOC106572313 coding upstream 620025 51106327 ~ 51107746 (+)
lzic lzic coding downstream 184012 51921146 ~ 51924442 (+)
LOC110532337 LOC106572044 coding downstream 436876 52174010 ~ 52176441 (+)
LOC110532339 LOC107599000 coding downstream 445094 52182228 ~ 52189437 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 470092 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 483703 52220837 ~ 52224935 (+)
G816505 NA non-coding upstream 26801 51700699 ~ 51700970 (+)
G816504 NA non-coding upstream 29382 51698163 ~ 51698389 (+)
G816427 NA non-coding upstream 127445 51599976 ~ 51600326 (+)
G816426 NA non-coding upstream 127978 51599459 ~ 51599793 (+)
G815768 casz1 non-coding upstream 377568 51348231 ~ 51350203 (+)
G816519 NA non-coding downstream 8603 51745737 ~ 51746013 (+)
G816521 NA non-coding downstream 10346 51747480 ~ 51747703 (+)
G816522 NA non-coding downstream 10923 51748057 ~ 51748477 (+)
G816600 NA non-coding downstream 118471 51855605 ~ 51857288 (+)
G816602 NA non-coding downstream 130325 51867459 ~ 51867996 (+)
G815767 casz1 other upstream 381277 51345372 ~ 51346494 (+)
G815610 NA other upstream 648829 51078447 ~ 51078942 (+)
G815428 NA other upstream 927390 50796214 ~ 50800381 (+)
G813139 NA other upstream 2612153 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 2721061 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 586137 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 989287 52692676 ~ 52734929 (+)
G819897 NA other downstream 2989737 54726871 ~ 54727376 (+)
G820665 NA other downstream 3496124 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3793903 55531033 ~ 55647541 (+)

Expression


Co-expression Network