G816600


Basic Information

Item Value
gene id G816600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51855605 ~ 51857288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU928767
ATATGAAGGTCCATTTCTGTAGATTAATCATTAAACCCATTTTGCTTGATATAATTAAATAACCCATCCCAGTTGAAAAAGTAATTTCAACAATAGCTGTAAACCTGTGTgcatcatcatttatttcaattcaAAGTCCTGGATTCCAAAACAGGTatgtgggtaaaataaacaaATTCCTGTACAgttaaaggaaaaatccactcAAACTATATTGGCATTTTGTTCCATTAGTCaattgttgatacagtcccaaaatgtttagCATATCAGCAGTCAAGTTAAGATATTGGACTatcaagaagcaaagtgtcacttgCCACGTCATGTTGATGCAttttgctgagtagagttttCCTTTAAGGGCTCAGACGCACAAATAGCATTTGCTGGCAGAGAGCACTTGGCACCTCAACCTAATTCGCAAACTGATTTTACATATAGAAAAACATTGAGATCAACATTTGGTGAGACGTGTGCGAGCCTTAAGTTATAGTTAGCCACTCCCAATTCACTTCCTACCCCTTCGGTGTTTGCAGATCCATAAAGTAAAAGCAATATACACTACACAGTTAATACCTTtccagacccttcagatctgCAAACTTCGAAGGGTTAGGGCTaaggaggagagggacggaacaAATTGGATCTGAGCATTTAAGTCAGCAACCTGGGTAAAGATTAAGAAACCGTGAGCTTTGAGAGAACTCTTGATGTGGGAGATGTGTTCCTATACCCTGCTGTGGGAGATGTGTTCCTATATCCTGCTGTTTTTCCAATGGTGTTCATGCTACAAAGATGCTTTATATTGTCTTATGACCGTTCTGCTCCATCGTAAGAGGGTTTGCCATGAGGCGCTTGGGAGGTTTTGAACTATAGGCCATACAACCAAACTAACCAACCATACATAATTTAAACCAATGCTTCACTTACCACTTTCATCAAATTAAGCCCACAATTAGTTTTTGTTTGTCTACAAGACAATCTAGCACGTTCATTTCAAGCTACATTTTTAAATATGTATTCTCATTTCCCAAGCCTCGTCAGCAAACGGCACAAGATGTGTGCATGTTGTACTGTAAACTGTATGGTTATGATAAACAATATTGTGAATTAGTTCAGCCACTTTCTTTTCAATGTCTTGTTTAAAGTTTTACCACCCAGACAACCAAAATGTATCCCAATCCTAAATGTATCATCCGTCCCTTCATAAAGCTGAAATGTAATAATTCATCTAACAAAGTATACATAAAGTCACAAAACCGAGGGaaaataaacaatgaatgaagAAATGCATTCTGCTGCTAAGACCTGTGACAGCTGCTTATCCTTGCAGTGTTACGTATatatgtagatatatacacaaagTCATGAGCAAAAACCTTTTAAAAGTCTTAACTTTATTATGTTTCATTTTAGAGCTAAGGGCCTTCAGATGATGACCCGAGAAAATAAGGATAAAGGGAAGAAAAATAAAATCAGGTTTCATTTATTTCTCTTGCGTTTTCCCCCCGTTCTTGATGGTATTTACTTCAGGCATGGTGAATTAATGATGGTAACATCCCTTACTGACggcggggcggggggggggggggggttgaagttGGGCTGTCATTAGAGGAAACGTCCCTGGCCTTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU928767 True 1643 lncRNA 0.39 2 51855605 51857288

Neighbor

gene id symbol gene type direction distance location
tardbpl tardbp coding upstream 145253 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 536223 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 673871 51173762 ~ 51181734 (+)
LOC110531197 NA coding upstream 728093 51125135 ~ 51127512 (+)
cort LOC106572313 coding upstream 747859 51106327 ~ 51107746 (+)
lzic lzic coding downstream 63858 51921146 ~ 51924442 (+)
LOC110532337 LOC106572044 coding downstream 316722 52174010 ~ 52176441 (+)
LOC110532339 LOC107599000 coding downstream 324940 52182228 ~ 52189437 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 349938 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 363549 52220837 ~ 52224935 (+)
G816522 NA non-coding upstream 107128 51748057 ~ 51748477 (+)
G816521 NA non-coding upstream 107902 51747480 ~ 51747703 (+)
G816519 NA non-coding upstream 109592 51745737 ~ 51746013 (+)
G816478 pgd non-coding upstream 118471 51727771 ~ 51737134 (+)
G816505 NA non-coding upstream 154635 51700699 ~ 51700970 (+)
G816602 NA non-coding downstream 10171 51867459 ~ 51867996 (+)
G816624 NA non-coding downstream 49037 51906325 ~ 51906646 (+)
G816646 clstn1 non-coding downstream 95557 51952845 ~ 51990544 (+)
G816663 NA non-coding downstream 110272 51967560 ~ 51979205 (+)
G816645 ctnnbip1 non-coding downstream 160655 52017943 ~ 52050502 (+)
G815767 casz1 other upstream 509111 51345372 ~ 51346494 (+)
G815610 NA other upstream 776663 51078447 ~ 51078942 (+)
G815428 NA other upstream 1055224 50796214 ~ 50800381 (+)
G813139 NA other upstream 2739987 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 2848895 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 465983 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 869133 52692676 ~ 52734929 (+)
G819897 NA other downstream 2869583 54726871 ~ 54727376 (+)
G820665 NA other downstream 3375970 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3673749 55531033 ~ 55647541 (+)

Expression


Co-expression Network