G816645 (ctnnbip1)


Basic Information

Item Value
gene id G816645
gene name ctnnbip1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52017943 ~ 52050502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU928815
tttgttttttaaaattcctTTAATGGTTCAATTGGTATAGGATTTGGAAGCATTTAGTCAGCAGCCATACAGCAAGGACCAACTAATCGATGTCAACAGAGAAATACAAAGGCAACACAAAATAACTCAAACGACAACTAGGCAAAGACAGGTCATCACATTGAAAGATACACAGCTCTAGTCATACTGAACAGCATGCTGAAAAATCTGATTTGTATAATTTTTGAACAGAGGAaatcacacacatgcacgcactcacacacaaagaTTACAAATGAAGGCTGTTGGTCAACTATGACAGGTATAGTATATAAGATACCTTTGCATTGTTGTCTTTAAGATGAAAGCAAAACAATACACAGAGAAATTAGGTTCAAGAAAGTTAAAACAAGAGTAAACATTAAAAAGGACAAACTTTTGTCATAGGCAGATACTGTAACTATTTGTTGGCAATGTATGTAGCCATGATCGCTGAGGAAATTTGATCCTGAAATTATTGCCAACAGGATAACATGgatgacattttttttgtttttttaaatagctGACTATTTTTCTGAAATGTTTTTTAAAGAGCTAGTAGCGTCCATAAACTGAGAATGTACAAGCAATGGTCATTGTGGCACGGCTTTCAAGACCCTCCCAGATCTACTTAAAATGTACACTGTTAACCACAAGGCAGGCATGCTTGGTTTCAAAACATCAAGTCACAATTGTTTAAGTTAAGCGAGTTAACAAAAAGGTACTTACACACATTAAATATAGAGTATCTtactacaacaaaaaaaaaaacagtcggattgaaaaaaaaaatacaaatattcaaTTGAATGGAAAGATTCCAGTTGCAATCAACGAACACAGAAAACGGATCGGTTTTGTTTACAGCACGTCAATTGCTGAAGGGTAGGAGGAGGCAGTAAAAACACTGTCGTTTCTTTTGTGAGTATTCACCATGTTTCTAGTAGCTCCATGGATGTGGTTCGAGTTGATATAATTATATTAGTGTGAGTCAAGAGTAAGCTTTGTCCAATCTAAAGAGTGACAATATTATGCTATTGGATTCTGTTGATAAGATTAGGCGTTTCAATCCGTGTAGACTTTCTTCTAATGATGATTTTTTTTCCTAAACAATAGTTTGGGAGAGAGTCAATTCTATCAATAATAAATTAGAACTACGCTATGTCCCTCGTCAGGCAacttttaaaaatcatgttacatttattttacagataaaaaaaataaaataataattggcACAATCAATTCATTATTATTGTATTTTCCCTCTAATATCTGTACAATAAAAAAAGTTAGATAATTTCACAATAACCCCAAGACCTTGTTTGCTTGGGGAAAGGCCATTTGCACCTATgtgaactgtgtgtgtttgtgctagtGTCATTGATTCTAATGTCCCGAAAGGGAAGCCAAGTTGACATCTCAACAGCCTATTGTTCAAATCAACAATAAGCAGGAAGAAGTACAATTGGTTTGAAAGAATATGAAAACCATTAAACACGTTTTTAACCTTTCCACCTACAGGGACCCTGTGtacagttaaaaaatatatataattcaaCCAAAGAAAGTAATGAATTATTTTCCCGCAAGGTCATTAGTTAAAACACTCACGCTTCTCTCTTTCATTTGACGGAAAAATTATGTCCTTGGTCAGTTCTACCATTGAGTAGAGCAGATACGAAAACAACACTGCccgataaaaaaattaaaaataaaacgaGACAAAAAGACAAGGTTTGCATTCACACAACTTGTAAGTGTTTTCATCGACTTGCTCGACACCAAGGCCCTAACCCATGGTAATGCATACCTACTGTGGCTGGGGCAATGGTGTATCCGTTTGAATGGGAAGGAGGCTGGTTGAAAGGGAGGGATAGAGCGAAAGGTAACCAACACCCAGTGCTCCTTCCCACCCTCCTTCCATCCATCACAGGTGCCCATCCTCTCCCCAGAAACTCAACAGTGTTGTGTCGGTCGGTGGAGTTTGGGTTGCCGTAGACGATGGGGGAGTGCCCCAGGGTCACTGCCGCCGGTCTTCGGTTTCTTGTCGTGAAAAAGCCATCACCACATCCTCCGCACCTGGTGACCCAGATCCACAAACAGAGgacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctcctgctccagtttcaactg
>TU928816
tttgttttttaaaattcctTTAATGGTTCAATTGGTATAGGATTTGGAAGCATTTAGTCAGCAGCCATACAGCAAGGACCAACTAATCGATGTCAACAGAGAAATACAAAGGCAACACAAAATAACTCAAACGACAACTAGGCAAAGACAGGTCATCACATTGAAAGATACACAGCTCTAGTCATACTGAACAGCATGCTGAAAAATCTGATTTGTATAATTTTTGAACAGAGGAaatcacacacatgcacgcactcacacacaaagaTTACAAATGAAGGCTGTTGGTCAACTATGACAGGTATAGTATATAAGATACCTTTGCATTGTTGTCTTTAAGATGAAAGCAAAACAATACACAGAGAAATTAGGTTCAAGAAAGTTAAAACAAGAGTAAACATTAAAAAGGACAAACTTTTGTCATAGGCAGATACTGTAACTATTTGTTGGCAATGTATGTAGCCATGATCGCTGAGGAAATTTGATCCTGAAATTATTGCCAACAGGATAACATGgatgacattttttttgtttttttaaatagctGACTATTTTTCTGAAATGTTTTTTAAAGAGCTAGTAGCGTCCATAAACTGAGAATGTACAAGCAATGGTCATTGTGGCACGGCTTTCAAGACCCTCCCAGATCTACTTAAAATGTACACTGTTAACCACAAGGCAGGCATGCTTGGTTTCAAAACATCAAGTCACAATTGTTTAAGTTAAGCGAGTTAACAAAAAGGTACTTACACACATTAAATATAGAGTATCTtactacaacaaaaaaaaaaacagtcggattgaaaaaaaaaatacaaatattcaaTTGAATGGAAAGATTCCAGTTGCAATCAACGAACACAGAAAACGGATCGGTTTTGTTTACAGCACGTCAATTGCTGAAGGGTAGGAGGAGGCAGTAAAAACACTGTCGTTTCTTTTGTGAGTATTCACCATGTTTCTAGTAGCTCCATGGATGTGGTTCGAGTTGATATAATTATATTAGTGTGAGTCAAGAGTAAGCTTTGTCCAATCTAAAGAGTGACAATATTATGCTATTGGATTCTGTTGATAAGATTAGGCGTTTCAATCCGTGTAGACTTTCTTCTAATGATGATTTTTTTTCCTAAACAATAGTTTGGGAGAGAGTCAATTCTATCAATAATAAATTAGAACTACGCTATGTCCCTCGTCAGGCAacttttaaaaatcatgttacatttattttacagataaaaaaaataaaataataattggcACAATCAATTCATTATTATTGTATTTTCCCTCTAATATCTGTACAATAAAAAAAGTTAGATAATTTCACAATAACCCCAAGACCTTGTTTGCTTGGGGAAAGGCCATTTGCACCTATgtgaactgtgtgtgtttgtgctagtGTCATTGATTCTAATGTCCCGAAAGGGAAGCCAAGTTGACATCTCAACAGCCTATTGTTCAAATCAACAATAAGCAGGAAGAAGTACAATTGGTTTGAAAGAATATGAAAACCATTAAACACGTTTTTAACCTTTCCACCTACAGGGACCCTGTGtacagttaaaaaatatatataattcaaCCAAAGAAAGTAATGAATTATTTTCCCGCAAGGTCATTAGTTAAAACACTCACGCTTCTCTCTTTCATTTGACGGAAAAATTATGTCCTTGGTCAGTTCTACCATTGAGTAGAGCAGATACGAAAACAACACTGCccgataaaaaaattaaaaataaaacgaGACAAAAAGACAAGGTTTGCATTCACACAACTTGTAAGTGTTTTCATCGACTTGCTCGACACCAAGGCCCTAACCCATGGTAATGCATACCTACTGTGGCTGGGGCAATGGTGTATCCGTTTGAATGGGAAGGAGGCTGGTTGAAAGGGAGGGATAGAGCGAAAGGTAACCAACACCCAGTGCTCCTTCCCACCCTCCTTCCATCCATCACAGGTGCCCATCCTCTCCCCAGAAACTCAACAGTGTTGTGTCGGTCGGTGGAGTTTGGGTTGCCGTAGACGATGGGGGAGTGCCCCAGGGTCACTGCCGCCGGTCTTCGGTTTCTTGTCGTGAAAAAGCCATCACCACATCCTCCGCACCCTGGTCTATGTTGTGCTGTGGTAGCTGGCTCATCTGAGCGTTGACCACGCCTGCGTAATTCCGTAGAAACGCCTCCTCACTCGGCGTCAGATTTGATCCCATCTTCTTCAGCATGAGCAGGACCCGCACCTTTTGCTGGACGTACATCTCTTCAGGAGACTTCCCTGGGGCCTCCTCACGGTTCATCCCCCCTGCTCCTGTAGCTCCCTCCTGGTCCAGTTTTCCTTTCTTCTGTGTTTTATTGTAATGGTGTGTTGTTTTACGAAGGCGTCCTGTTCCGGGGTCACATCCCTCCAGTTGGGAATCTGGTGTAACCCTCCAGTTGGAGCTGCGTGGTGGAGCTGGCTCCCGTTGTTGTTTTAGTTCCAGGCGACCACTAGGGGAGCCGTCCgcccaaaatgtaattttgtGACTGACttttttttattcattatttTGTTATTTACATTTAAGTAATTTATAGACAGGTTAACTGGCGTCACGAAAA

Function

symbol description
ctnnbip1 Predicted to enable beta-catenin binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and optic tectum. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU928815 False 2226 lncRNA 0.38 2 52017943 52036096
TU928816 True 2591 lncRNA 0.40 4 52017943 52050502

Neighbor

gene id symbol gene type direction distance location
lzic lzic coding upstream 93501 51921146 ~ 51924442 (+)
tardbpl tardbp coding upstream 307591 51705866 ~ 51710352 (+)
pex14 pex14 coding upstream 698561 51202733 ~ 51319382 (+)
masp2 masp2 coding upstream 836209 51173762 ~ 51181734 (+)
LOC110531197 NA coding upstream 890431 51125135 ~ 51127512 (+)
LOC110532337 LOC106572044 coding downstream 123508 52174010 ~ 52176441 (+)
LOC110532339 LOC107599000 coding downstream 131726 52182228 ~ 52189437 (+)
si:dkey-6n6.1 LOC106572038 coding downstream 156724 52207226 ~ 52216054 (+)
LOC110531199 LOC106572039 coding downstream 170335 52220837 ~ 52224935 (+)
dedd LOC106572035 coding downstream 179252 52229754 ~ 52234943 (+)
G816646 clstn1 non-coding upstream 27399 51952845 ~ 51990544 (+)
G816663 NA non-coding upstream 38738 51967560 ~ 51979205 (+)
G816624 NA non-coding upstream 111297 51906325 ~ 51906646 (+)
G816602 NA non-coding upstream 149947 51867459 ~ 51867996 (+)
G816600 NA non-coding upstream 160655 51855605 ~ 51857288 (+)
G816733 NA non-coding downstream 64725 52115227 ~ 52115437 (+)
G816737 NA non-coding downstream 67734 52118236 ~ 52118440 (+)
G816740 NA non-coding downstream 74041 52124543 ~ 52124744 (+)
G816741 NA non-coding downstream 74876 52125378 ~ 52125719 (+)
G816742 tmem201 non-coding downstream 75298 52125800 ~ 52126017 (+)
G815767 casz1 other upstream 671449 51345372 ~ 51346494 (+)
G815610 NA other upstream 939001 51078447 ~ 51078942 (+)
G815428 NA other upstream 1217562 50796214 ~ 50800381 (+)
G813139 NA other upstream 2902325 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 3011233 48962187 ~ 49006710 (+)
LOC110532349 LOC106591969 other downstream 272769 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 675919 52692676 ~ 52734929 (+)
G819897 NA other downstream 2676369 54726871 ~ 54727376 (+)
G820665 NA other downstream 3182756 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3480535 55531033 ~ 55647541 (+)

Expression


Co-expression Network