XLOC_027186 (si:dkey-39a18.1)


Basic Information

Item Value
gene id XLOC_027186
gene name si:dkey-39a18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13428993 ~ 13434027 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053571
TGTCCTCAGTGTGACTTGGTAGCGAGTTTTTCCACTGTGCGGACTTGATGACATTCAGCATGCCCATGGGTAAATAATAACCAGGATGGGCTTTTCTGGCAAAGACCTCCCCATGGATGGGAATGAAGACTGGCGCTCCCACAAAATCAGGAAAAGCAGAAGCCAATCCCCGTTTCGGGATGTTTCACCTGTACCATCATATTTCTCAGAACCGGTCTCGTTCCTGCAGCACAGGGATGTAATTGCCAGCTTTCCCCCTCTCCCACGTATAAGGAAGCCACATGGGGacgaagaagatgatgatgatgctcgGAGTCACAAGAGTTTACCAGCAGTGTTTGAATCATTAACCCTTCAACCCAGACACAACAGGTCACACAGACCTACAAAAAATAACATCATATCTGGTTTACCTCCTCTCGTAAGCAACAGGTGCAATTTGATTGTAAAAGGAACTGGGTGCAAAACTGTCCCCAAACTCCCACCTATTACCAAATCCAGGTCTACTTGGAAGGAAACAAACCGCTCAAGTTACAGGCCTGACAAAATGGAATTCAATTCAACTACACCTGCCCATGCACTGGTGCATCCAAAAATTGTACCTGTCGGGCAGACGTCTCTGTCTGTCAAGGCCCACAGTGTTCAGAAAAATGGGCCCTGCTTGCTTCCTGCCAAAGCCTCTGGAGTGTCCCCGAGATCTCGACTCACTTTCCAGAGTCCTGTAGTGCAGGCAGTGTACCCTATCAGTCCTGACACCATGCAACAGATGAGGCAGACTGACAGACCATGCCAGCCCCTGAGATCTGTGCTGAAAAAAGCACCAAATGGAGGAGTGTTTGACTGCCCACTGGCAGCCCACCTACTGGAGCCATTTTCTGGGTTTCAGGAGCATCTGTGTCGGCAGATCCTACATTCTCCACTGCcttatcgtgcagctctaccacACATCCATATTCCATGTCACCAGGACCAGGTAGATCAGTTGCCTGCACATAGGGACCCATGCGTTTTCCTGATGGAGCGCACTGTGGAACTCTGCAACTCCCAAGGACACTGGCTTCCCAAAATCACCATGACCTGCCCAACACCTTCTCCGAAACATCTGTCTCGCACGGAAATTAGATATGTGGCTTAAAAAAACCCCAAGATGATTGTTGAGTAAAAACACTTGCACTGCTCGATGCTGTTTGAAGTTAGTATGTGCACAAAGGATCAGAAAGATCACCACTAACACCACCAAGATCTCAAATTCATTTTGCACGTAAAGAAACAATAAAGCCAAAACTGGAACAACTTCCCAATCTCCTGGCACTTCTCCTGATTCCTCATAGATTATTGGACTCATGGTCATAACACTCTTCTTTCCTCAgctcaagttattgtataaccaatGATCTTTCATCTAGTTTCCATGGAAGCCCTAGGCATCATTAAAGCATGTTGGAACTGGACCTGAGGGGCAGCACTGTTCCACAGGTATAGGAAGTGCCTCCAAGGAGCTTTAAAAAATCATGCAGTACATTTTCCTGGGTGTTAAGATCCCTAGAGGTACAAATCATAAGTCTGACTTACCTAGGAGGAATGCAATATATTTCCTTCTACCCACTTTCCTaggtctttcttttctttttaaaatcaatacaattTTCTCAGTTGAGCAGAATCTACAGTGAGATAGAGGTCCAGGAgcaatttttacattttccaTCACAGCCTACTGCAGATATATCTGCCTTTTTTTTTGGTACCGGAGTGTGTATTTTTGAGTATTTGAAGATGTGTATTTGCAAGAAGTAAATGTACTCTTAATAGCCCTATGAGAAAGACTTTTCATTGCAATATGAAATTATGAAGAACATTGATTATCAAAGAATGTGTGTAAAGTGGTACCTACATTACAATATGAAgtaaatttaaattcttttaaacgTATTTGCTTGGAAGTTTATTCATACTTGTAAATCTTAATGTAAAAATTTTTACTCTAATATTTTTCCAATGGGCCCATATTAACTGGTAAAAGTGTTATCTTAAGAGCAAAAGTGTTATATTAAATGTGATTTGGACTAGCTTTTGCCAGTCTTTTAACAATTTACAATGTAAAGCTGCCATGTGCCATGCCATTAAAAGTTTTTTCTAACTAAA
>TCONS_00053572
GACTTGGTAGCGAGTTTTTCCACTGTGCGGACTTGATGACATTCAGCATGCCCATGGGTAAATAATAACCAGGATGGGCTTTTCTGGCAAAGACCTCCCCATGGATGGGAATGAAGACTGGCGCTCCCACAAAATCAGGAAAAGCAGAAGCCAATCCCCGTTTCGGGATGTTTCACCTGTACCATCATATTTCTCAGAACCGGTCTCGTTCCTGCAGCACAGGGAAGCCACATGGGGacgaagaagatgatgatgatgctcgGAGTCACAAGAGTTTACCAGCAGTGTTTGAATCATTAACCCTTCAACCCAGACACAACAGGTCACACAGACCTACAAAAAATAACATCATATCTGGTTTACCTCCTCTCGTAAGCAACAGGTGCAATTTGATTGTAAAAGGAACTGGGTGCAAAACTGTCCCCAAACTCCCACCTATTACCAAATCCAGGTCTACT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-127 No description available

Ensembl:

ensembl_id ENSDARG00000045669

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053571 False 2145 mRNA 0.43 6 13428993 13434027
TCONS_00053572 True 458 nonsense_mediated_decay 0.47 5 13429005 13431011

Neighbor

gene id symbol gene type direction distance location
XLOC_027185 cand1 coding upstream 3546 13412030 ~ 13425447 (+)
XLOC_027184 BX470116.1 coding upstream 154358 13270792 ~ 13274635 (+)
XLOC_027183 NA coding upstream 231128 13178158 ~ 13197865 (+)
XLOC_027182 NA coding upstream 404972 12997120 ~ 13024021 (+)
XLOC_027180 BX119963.3 coding upstream 430282 12979653 ~ 12998711 (+)
XLOC_027187 dyrk2 coding downstream 15748 13449775 ~ 13462784 (+)
XLOC_027188 NA coding downstream 34564 13468591 ~ 13469897 (+)
XLOC_027189 NA coding downstream 55655 13489682 ~ 13493356 (+)
XLOC_027190 calua coding downstream 134442 13568469 ~ 13576215 (+)
XLOC_027191 NA coding downstream 150027 13584054 ~ 13586183 (+)
XLOC_027181 NA non-coding upstream 443946 12980696 ~ 12985047 (+)
XLOC_027179 NA non-coding upstream 448668 12979512 ~ 12980325 (+)
XLOC_027198 NA non-coding downstream 442877 13876904 ~ 13890091 (+)
XLOC_027200 CU469420.1 non-coding downstream 672484 14106511 ~ 14108810 (+)

Expression


Co-expression Network