G816941


Basic Information

Item Value
gene id G816941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52506294 ~ 52506512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU929144
gaacataAATCTTCGCCCACAATCTAAGGTCGTTTGCACTATGAAGCAGGtactcatcaaggatttgcctgtatttggctccattcattgttccctctatccttaccagtctcccagtccctgttgctgaaaagcatccccatagcatgatgctgccaccaccatgcttcccagtagggatggtgttagacggaAGATGAGCTGTACCTgcttttctcc

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU929144 True 219 lncRNA 0.48 1 52506294 52506512

Neighbor

gene id symbol gene type direction distance location
LOC118936401 LOC106566850 coding upstream 1700 52502997 ~ 52504594 (+)
sike1 sike1 coding upstream 18061 52485523 ~ 52488233 (+)
LOC110532349 LOC106591969 coding upstream 180370 52323001 ~ 52325924 (+)
LOC110532344 LOC106572032 coding upstream 211438 52260178 ~ 52294856 (+)
LOC118966072 LOC106572034 coding upstream 252882 52204844 ~ 52253412 (+)
htr6 LOC106572282 coding downstream 6999 52513511 ~ 52514463 (+)
vwa1 LOC106572023 coding downstream 43615 52550127 ~ 52567525 (+)
LOC110532365 LOC106572021 coding downstream 99931 52606443 ~ 52621080 (+)
LOC110532366 NA coding downstream 153162 52659674 ~ 52663309 (+)
LOC110531201 NA coding downstream 174999 52681511 ~ 52684202 (+)
G816940 NA non-coding upstream 7 52505992 ~ 52506287 (+)
G816934 NA non-coding upstream 11484 52494545 ~ 52494810 (+)
G816931 NA non-coding upstream 13454 52492635 ~ 52492840 (+)
G816929 NA non-coding upstream 14981 52490996 ~ 52491313 (+)
G816865 NA non-coding upstream 62539 52425357 ~ 52443755 (+)
G816951 NA non-coding downstream 21896 52528408 ~ 52529246 (+)
G816956 NA non-coding downstream 33557 52540069 ~ 52540439 (+)
G816957 NA non-coding downstream 35089 52541601 ~ 52541824 (+)
G816962 NA non-coding downstream 38450 52544962 ~ 52545180 (+)
G816972 NA non-coding downstream 62551 52569063 ~ 52570146 (+)
G815767 casz1 other upstream 1159800 51345372 ~ 51346494 (+)
G815610 NA other upstream 1427352 51078447 ~ 51078942 (+)
G815428 NA other upstream 1705913 50796214 ~ 50800381 (+)
G813139 NA other upstream 3390676 49115137 ~ 49115618 (+)
LOC110532368 LOC106572016 other downstream 219909 52692676 ~ 52734929 (+)
G819897 NA other downstream 2220359 54726871 ~ 54727376 (+)
G820665 NA other downstream 2726746 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 3024525 55531033 ~ 55647541 (+)
G820944 NA other downstream 3191128 55697640 ~ 55697978 (+)

Expression


Co-expression Network