G816962


Basic Information

Item Value
gene id G816962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52544962 ~ 52545180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU929168
gatcattgctagatagctattttcaagtcttgccataagTCAAAACTggaactaggccactcaggaacattcaatgtcatcttggtacacaactccagtgtatatttggccttttgttttggttattgtcctgctaaaaggtgaatttgtctcccagtgtctgttggaaggcAGATGGAATTCCTCTATGAtcctgcctgtgcttagctctatttagtt

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU929168 True 219 lncRNA 0.41 1 52544962 52545180

Neighbor

gene id symbol gene type direction distance location
htr6 LOC106572282 coding upstream 30499 52513511 ~ 52514463 (+)
LOC118936401 LOC106566850 coding upstream 40368 52502997 ~ 52504594 (+)
sike1 sike1 coding upstream 56729 52485523 ~ 52488233 (+)
LOC110532349 LOC106591969 coding upstream 219038 52323001 ~ 52325924 (+)
LOC110532344 LOC106572032 coding upstream 250106 52260178 ~ 52294856 (+)
vwa1 LOC106572023 coding downstream 4947 52550127 ~ 52567525 (+)
LOC110532365 LOC106572021 coding downstream 61263 52606443 ~ 52621080 (+)
LOC110532366 NA coding downstream 114494 52659674 ~ 52663309 (+)
LOC110531201 NA coding downstream 136331 52681511 ~ 52684202 (+)
LOC110532368 LOC106572016 coding downstream 147496 52692676 ~ 52734929 (+)
G816957 NA non-coding upstream 3138 52541601 ~ 52541824 (+)
G816956 NA non-coding upstream 4523 52540069 ~ 52540439 (+)
G816951 NA non-coding upstream 15716 52528408 ~ 52529246 (+)
G816941 NA non-coding upstream 38450 52506294 ~ 52506512 (+)
G816940 NA non-coding upstream 38675 52505992 ~ 52506287 (+)
G816972 NA non-coding downstream 23883 52569063 ~ 52570146 (+)
G816969 NA non-coding downstream 25754 52570934 ~ 52572824 (+)
G816981 NA non-coding downstream 43253 52588433 ~ 52588713 (+)
G816985 NA non-coding downstream 46870 52592050 ~ 52592363 (+)
G816988 NA non-coding downstream 50804 52595984 ~ 52596584 (+)
G815767 casz1 other upstream 1198468 51345372 ~ 51346494 (+)
G815610 NA other upstream 1466020 51078447 ~ 51078942 (+)
G815428 NA other upstream 1744581 50796214 ~ 50800381 (+)
G813139 NA other upstream 3429344 49115137 ~ 49115618 (+)
G819897 NA other downstream 2181691 54726871 ~ 54727376 (+)
G820665 NA other downstream 2688078 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 2985857 55531033 ~ 55647541 (+)
G820944 NA other downstream 3152460 55697640 ~ 55697978 (+)

Expression


Co-expression Network