XLOC_027189


Basic Information

Item Value
gene id XLOC_027189
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13489682 ~ 13493356 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057134
TACAAAGTTATTCAAATGCCTGGTGTCTTTAGTAGTGTAACTTACGTTAGCTGGCCTCCTCAGAAAGACCGCCAAATGCCGTCAGGTCTGCTTCTGGGATTCTGGTGGCTTAAAGGCGCCTGTCTAAAACAGCAGTTTTGCTATTAAAATTACACCAAAGTCATCCAGCATGTGTAAACACCAAAATCACTAACAACGCAGTCGACATTAAAGTgattttataaaagtatttacCGTCGGCGAACTCCACATTTCATCCGCTGCCAAATCACGACGCCAAAATCTCCGCCGCCGATGCCGCCAAAACATAGCTGACGTCATATCATCAATGCACACATATGAGGGCAACATGTTTGCTGGAAGCCAATGTATGACAGTGGAACCTTTAGAAATCCTCAACCTACACAGCCTGCCAGTCCCTGTAAATTCTCCCCGAAACTGTGTGAGGTGGGTGAACTTCGATTTCGGAGGGTAATGCGGTAAGGAGAAGCGTGACAAGAATGACTTCAAAGATT

Function

GO:

id name namespace
GO:0045495 pole plasm cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057134 True 515 lncRNA 0.45 2 13489682 13493356

Neighbor

gene id symbol gene type direction distance location
XLOC_027188 NA coding upstream 19785 13468591 ~ 13469897 (+)
XLOC_027187 dyrk2 coding upstream 26898 13449775 ~ 13462784 (+)
XLOC_027186 si:dkey-39a18.1 coding upstream 55655 13428993 ~ 13434027 (+)
XLOC_027185 cand1 coding upstream 64235 13412030 ~ 13425447 (+)
XLOC_027184 BX470116.1 coding upstream 215047 13270792 ~ 13274635 (+)
XLOC_027190 calua coding downstream 75113 13568469 ~ 13576215 (+)
XLOC_027191 NA coding downstream 90698 13584054 ~ 13586183 (+)
XLOC_027192 tnpo3 coding downstream 93099 13586455 ~ 13605158 (+)
XLOC_027193 ccdc87 coding downstream 122375 13615731 ~ 13624294 (+)
XLOC_027194 pnpla8 coding downstream 132536 13625892 ~ 13643616 (+)
XLOC_027183 NA non-coding upstream 291817 13178158 ~ 13197865 (+)
XLOC_027182 NA non-coding upstream 465661 12997120 ~ 13024021 (+)
XLOC_027181 NA non-coding upstream 504635 12980696 ~ 12985047 (+)
XLOC_027198 NA non-coding downstream 383548 13876904 ~ 13890091 (+)
XLOC_027200 CU469420.1 non-coding downstream 613155 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 non-coding downstream 623010 14116366 ~ 14119559 (+)
XLOC_027202 NA non-coding downstream 656704 14150060 ~ 14158028 (+)

Expression


Co-expression Network