XLOC_027190 (calua)


Basic Information

Item Value
gene id XLOC_027190
gene name calua
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13568469 ~ 13576215 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053577
GTTGCGAACGGACTCCACTGGTCGTGATTTGATTGGGCTGCGGCGCTCTTCTCGTCCGAAAAACGGTGTGGCACAGGGGTGTGAGGATTAAACCAAAGACCCTGTATTGTGTCTGGGATTCTCGGCCTCCTAAATAATTAAGAGCTTGGAAGATGAAGATGGAAATTAGGCCTTTGTTGATGTGCTTTGCTCTGTGCGTGGTTTACGCCACCAGCAAACCAACAGAGAAGAAAGACAGGGTCCACCATGATGCACCCCTGAGCAGCAAAGAGCATGACGATGGCACAAACTTTGAATACGACCACGATGCCTTCCTTGGAGAAGAAGAAGCCAAAACATTTGATGATCTGACTCCGGAAGAAAGCAAAAATAGGCTTGGTAAAATTGTGGAAAAGATTGATGCAGATGAGGATGGTTTTGTGACAGAGGCCGAGCTGAAAGCATGGATCAAAAAGGCtcaaaagaaatacatttatgaCAATGTGGAGAGACAATGGAAGGATTTTGATCTGAACAACGATAGAATGATCTCCTGGGAAGAATACAAGAACGTCACCTATGGCACCTACCTTGATGATCCTGAACCTGATGATGGCTATAACTACAAACAGATGATGGCCAGAGATGAACGCCGCTTTAAAATGGCTGATGGGAATGGAGACCACATCGCTGATAAAGAGGAGTTCACGGCTTTCCTCCATCCTGAGGAGTATGAACATATGAAGGACATTGTTGTGCTGGAAACAATGGAGGACATTGACAAGAATGGTGATGGGTTTATTGATTTGGAGGAGTATATTGGTGACATGTACAACCATGAGGATGAAATGGACGAGCCGGAGTGGGTGGCGACAGAGCGAGAGCAGTTTTCGGAGTTCAGAGACAAGAACAAGGATGGCAAAATGGACAGGGAAGAAACCATGGACTGGATCCTACCAGCCGACTACGATCACGCTGAAGCCGAAGCGAAGCATCTGGTGTATGAGTCTGACACAAACAAGGATGGAAAGCTGACCAAAGAAGAAATACTCAACAAGTATGATTTGTTTGTGGGAAGCCAAGCGACTGACTTCGGGGAGGCATTAGTTCGACATGatgagttttaattatttcttttttagtaTAATAGATAATTACTTTTTAACTTGTTTTGGTAAaagaatataattttatattgcCTCATCATAATACAACACTAATTCCTCAGAATTTTGTTCACTTGATTTTCCTTTTTGCACAAATTTCATAGCTTTTTTTGTACTGTAAAGTGTGTaacttttgtttgatttgaagtcCATGTAcagcattattatcatcatttcaGTAACTGTATATGTCTGTTTTTTATTGAGAAGCGGTTGATGGATTCAGTGCAGTTTTATACACATTGCTACAGATCTATAATCGGCTCCCCCTGCTGTTCACAGTTCTGTCGTAAGAATATTGTAAGTACAGAAAGCTCTCATGTTGATTTTTGAGGGTTTATACAAATATGtataacatattaaatatatattcacacaTAAAAATGTGAATATGTATTTGTTATCTCACATTTCAAAGCAGAAACATCTGTTTTTGAGTGATGACTCTTCATTTTTCTCTCCAGGCAATActgttgtctttttttatttatttagaagaaCAATACATGTCCATGAACTTTAATCATTGTGCCTTTCATTGATTTTCCTGTTAGATTTAGATCTTAGCTtgtattatatgtgtataatTCAAATCTTTTGGGTTTGTTGGGTCCATCAGAACACGTTACTGAACAATTTGTTGCCTTCAACTTTATTATTTGAAATGCATTACCAATTACATGATGTTTGTAACATGTTTAATATGCTGCAAACACATCAATCTCCCCCATTGtctattcatttttcttttatctttatttttttcagtatataATGTTTGGCACCTAAAGGTTTCAGGTCACTTGTTGCGAATGGTGCTGTTTCACCACCTGCAGATTGTATCTCGAACACAAATtgtcaataaaaccaaaatatgagct
>TCONS_00053578
GAAAAACGGTGTGGCACAGGGGTGTGAGGATTAAACCAAAGACCCTGTATTGTGTCTGGGATTCTCGGCCTCCTAAATAATTAAGCTTTCCATAGAGCTTGGAAGATGAAGATGGAAATTAGGCCTTTGTTGATGTGCTTTGCTCTGTGCGTGGTTTACGCCACCAGCAAACCAACAGAGAAGAAAGACAGGGTCCACCATGATGCACCCCTGAGCAGCAAAGAGCATGACGATGGCACAAACTTTGAATACGACCACGATGCCTTCCTTGGAGAAGAAGAAGCCAAAACATTTGATGATCTGACTCCGGAAGAAAGCAAAAATAGGCTTGGTAAAATTGTGGAAAAGATTGATGCAGATGAGGATGGTTTTGTGACAGAGGCCGAGCTGAAAGCATGGATCAAAAAGGCtcaaaagaaatacatttatgaCAATGTGGAGAGACAATGGAAGGATTTTGATCTGAACAACGATAGAATGATCTCCTGGGAAGAATACAAGAACGTCACCTATGGCACCTACCTTGATGATCCTGAACCTGATGATGGCTATAACTACAAACAGATGATGGCCAGAGATGAACGCCGCTTTAAAATGGCTGATGGGAATGGAGACCACATCGCTGATAAAGAGGAGTTCACGGCTTTCCTCCATCCTGAGGAGTATGAACATATGAAGGACATTGTTGTGCTGGAAACAATGGAGGACATTGACAAGAATGGTGATGGGTTTATTGATTTGGAGGAGTATATTGGTGACATGTACAACCATGAGGATGAAATGGACGAGCCGGAGTGGGTGGCGACAGAGCGAGAGCAGTTTTCGGAGTTCAGAGACAAGAACAAGGATGGCAAAATGGACAGGGAAGAAACCATGGACTGGATCCTACCAGCCGACTACGATCACGCTGAAGCCGAAGCGAAGCATCTGGTGTATGAGTCTGACACAAACAAGGATGGAAAGCTGACCAAAGAAGAAATACTCAACAAGTATGATTTGTTTGTGGGAAGCCAAGCGACTGACTTCGGGGAGGCATTAGTTCGACATGatgagttttaattatttcttttttagtaTAATAGATAATTACTTTTTAACTTGTTTTGGTAAaagaatataattttatattgcCTCATCATAATACAACACTAATTCCTCAGAATTTTGTTCACTTGATTTTCCTTTTTGCACAAATTTCATAGCTTTTTTTGTACTGTAAAGTGTGTaacttttgtttgatttgaagtcCATGTAcagcattattatcatcatttcaGTAACTGTATATGTCTGTTTTTTATTGAGAAGCGGTTGATGGATTCAGTGCAGTTTTATACACATTGCTACAGATCTATAATCGGCTCCCCCTGCTGTTCACAGTTCTGTCGTAAGAATATTGTAAGTACAGAAAGCTCTCATGTTGATTTTTGAGGGTTTATACAAATATGtataacatattaaatatatattcacacaTAAAAATGTGAATATGTATTTGTTATCTCACATTTCAAAGCAGAAACATCTGTTTTTGAGTGATGACTCTTCATTTTTCTCTCCAGGCAATActgttgtctttttttatttatttagaagaaCAATACATGTCCATGAACTTTAATCATTGTGCCTTTCATTGATTTTCCTGTTAGATTTAGATCTTAGCTtgtattatatgtgtataatTCAAATCTTTTGGGTTTGTTGGGTCCATCAGAACACGTTACTGAACAATTTGTTGCCTTCAACTTTATTATTTGAAATGCATTACCAATTACATGATGTTTGTAACATGTTTAATATGCTGCAAACACATCAATCTCCCCCATTGtctattcatttttcttttatctttatttttttcagtatataATGTTTGGCACCTAAAGGTTTCAGGTCACTTGTTGCGAATGGTGCTGTTTCACCACCTGCAGATTGTATCTCGAACACAAATtgtcaataaaaccaaaatatgagctaaataa

Function

symbol description
calua Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and melanosome. Predicted to be active in endoplasmic reticulum. Is expressed in chordo neural hinge; floor plate; hypochord; notochord; and skeletal system. Orthologous to human CALU (calumenin).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0042470 melanosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0033018 sarcoplasmic reticulum lumen cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-166 Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and melanosome. Predicted to be active in endoplasmic reticulum. Is expressed in chordo neural hinge; floor plate; hypochord; notochord; and skeletal system. Orthologous to human CALU (calumenin).

Ensembl:

ensembl_id ENSDARG00000045676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053577 False 2026 mRNA 0.39 7 13568469 13576209
TCONS_00053578 True 1985 mRNA 0.38 7 13568526 13576215

Neighbor

gene id symbol gene type direction distance location
XLOC_027189 NA coding upstream 75113 13489682 ~ 13493356 (+)
XLOC_027188 NA coding upstream 98572 13468591 ~ 13469897 (+)
XLOC_027187 dyrk2 coding upstream 105685 13449775 ~ 13462784 (+)
XLOC_027186 si:dkey-39a18.1 coding upstream 134442 13428993 ~ 13434027 (+)
XLOC_027185 cand1 coding upstream 143022 13412030 ~ 13425447 (+)
XLOC_027191 NA coding downstream 7839 13584054 ~ 13586183 (+)
XLOC_027192 tnpo3 coding downstream 10240 13586455 ~ 13605158 (+)
XLOC_027193 ccdc87 coding downstream 39516 13615731 ~ 13624294 (+)
XLOC_027194 pnpla8 coding downstream 49677 13625892 ~ 13643616 (+)
XLOC_027195 nrcama coding downstream 120322 13696537 ~ 13728375 (+)
XLOC_027184 BX470116.1 non-coding upstream 293834 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 370604 13178158 ~ 13197865 (+)
XLOC_027182 NA non-coding upstream 544448 12997120 ~ 13024021 (+)
XLOC_027198 NA non-coding downstream 300689 13876904 ~ 13890091 (+)
XLOC_027200 CU469420.1 non-coding downstream 530296 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 non-coding downstream 540151 14116366 ~ 14119559 (+)
XLOC_027202 NA non-coding downstream 573845 14150060 ~ 14158028 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_04220852_04223533 CALU, CALUA coding CI01000020 null 4219833 ~ 4223533 (-)