XLOC_027191


Basic Information

Item Value
gene id XLOC_027191
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13584054 ~ 13586183 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057669
GACTcttcccttctctctctctccactcgCCATTTCTGTTCTCTGGTTTTGGCAGGTCTCTAAATTGGACTCTCTTATACATTCTGTTCATATTTTAATGTCTGGCTTTATTTAATATCACTCTATATTCAGTTTGTATGTATTATTCATGCTTCTTCATACATGCAACTTCTTATATCATGTACAGTTTGAAATATGAATgcacttatgtttgtttttaatgttgaaTGAGCTGTTTCATGAACGTCAAGGGCCATCCAGTGACCCGGGGTTGTATTGTAACCAAGCTGTAAGTGTCCATGATGCATGGGTATGATACGACCTGGGTTACAGAATGGTGATGGACATCCTGGAAATAACAGTAGTGTAATGCATCTTTATCTgctttatattaataaatgatgATTGAATGCAATGTAAATGTTTGATTGTGTGCAAATAAAAGTGAGATGGAAGATTTCTGGTGTTGAAAACTGAAACCATTTGGGATTCTTCTGCTTGGATGATCTTTTCTTATTTAAATCTGTCATGCCAGTGGGATCATTTCTCATAATGAAATGAAACAGAAGTAAAGAGGCTGAGGAAATACCATGCTGGAAACCAACATGAACAGGTGATTGTTTTTCACATGTATAATGTcagagctcggagtagagccgcttctcctccacattgaggtgtcttgggcatctgtttcggatgcctcctggacaccttgggaggtgttccaggcatgtcccaccgggaggagggctcggggaagacccaggacatgctggagggactatgtctctcagctggacTAGAAACGCCttgggatccccctggaggaggtgtctgggttctctcctgagactgcctGCCCAGTAaggtctagatcggatatgcagCCAGCCGGAAGTgagatatgcacatcaatattgcagcattttttatgacactgtataagaataatgaatatttttacagcactgtggtggttgggtttagggttgggggtagatgttaataaaatacaataaatgagaaatttaagaaataatatgagtAATTTtcattaacttctggccacaaccatatctgatctatagCAACAACCCTACTGCCCCTGCGAACCGGCCCTGGAAAAGcagaatgaatgatgaataaataatgtcAGAGTTTTTAATAGCAAATAATAGATGTAAAACATTGTATTTGACAGCTACACCACAAACATTTCTCTTGCAGACATTTTGCAAGagatttttgttcatatttttgctTTGATATATGAATTTGTTGTGCATATTCATAAACTTGTCAACTCTGTAATTTgtgaaaaaatgtatatttcGAAAATCCAAAACTAGTTTTCTAATAGaaagaaataatataaaacatttggcaatatttgcatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattaataaacacacacacaactgtccATCAAAAGTGAATTCAGAAAAATCCAGTCACTGATTCTTGTAGGTGTAAGTTATATAGACCGTGTCGTATAATAAATTTAATCGATAATATTCTAATTACTATAtaatacaaacaacaataaaaggAACCTCGCTTACCGACATACATGAATTACTTATAAGTGGCGGTTCTTTTTTGGTGAAGCAAGTAGTGTAGTTCGATTCTCATAAGAATGACTCTTCTGAACCAGTTCTTTGAGTGAATCAAAATGCTTCAGTCTGGGGGGTTATTGACTCAATTcttgaactgattttttttttttttgtaatttctgaGAAAGACTGGATTTAGAACTGTCGCTGTCATATGTTATAAATTAACCAGCAATAATCAGTAAGTAAGTATATAAGCAACacattaatgttaatttaaagtGTCAATATTATATGTATGTTGTAAAAAATCAGTGGTATTTTAtcgaataaataaattgatataaGTAAA
>TCONS_00053579
CGTCAAGGGCCATCCAGTGACCCGGGGTTGTATTGTAACCAAGCTGTAAGTGTCCATGATGCATGGGTATGATACGACCTGGGTTACAGAATGGTGATG

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0009581 detection of external stimulus biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000081977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057669 False 1945 lncRNA 0.36 2 13584054 13586183
TCONS_00053579 True 99 miRNA 0.51 1 13584483 13584581

Neighbor

gene id symbol gene type direction distance location
XLOC_027190 calua coding upstream 7839 13568469 ~ 13576215 (+)
XLOC_027189 NA coding upstream 90698 13489682 ~ 13493356 (+)
XLOC_027188 NA coding upstream 114157 13468591 ~ 13469897 (+)
XLOC_027187 dyrk2 coding upstream 121270 13449775 ~ 13462784 (+)
XLOC_027186 si:dkey-39a18.1 coding upstream 150027 13428993 ~ 13434027 (+)
XLOC_027192 tnpo3 coding downstream 272 13586455 ~ 13605158 (+)
XLOC_027193 ccdc87 coding downstream 29548 13615731 ~ 13624294 (+)
XLOC_027194 pnpla8 coding downstream 39709 13625892 ~ 13643616 (+)
XLOC_027195 nrcama coding downstream 110354 13696537 ~ 13728375 (+)
XLOC_027196 cntn1b coding downstream 147655 13733838 ~ 13756716 (+)
XLOC_027184 BX470116.1 non-coding upstream 309419 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 386189 13178158 ~ 13197865 (+)
XLOC_027182 NA non-coding upstream 560033 12997120 ~ 13024021 (+)
XLOC_027198 NA non-coding downstream 290721 13876904 ~ 13890091 (+)
XLOC_027200 CU469420.1 non-coding downstream 520328 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 non-coding downstream 530183 14116366 ~ 14119559 (+)
XLOC_027202 NA non-coding downstream 563877 14150060 ~ 14158028 (+)
XLOC_027203 NA non-coding downstream 576160 14162343 ~ 14167862 (+)

Expression


Co-expression Network