XLOC_027193 (ccdc87)


Basic Information

Item Value
gene id XLOC_027193
gene name ccdc87
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13615731 ~ 13624294 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053584
GTGCGTGACCAGAGTTTCCAGGGTAACGTCGCTTGTTAGTACACCGACATGCACAGGCGGAACTTTAGCCACATTTCGATAAACTATATTTTTGTCTTGATTTTGATCTTCAAACCACAATACATAATAGTCTAGTTAATTTTTAAACCGtttgtattgtaatttaattataaatatactttACTAGTACTGTTTTGACATAAATCACGTGATGTTCACTAAAGAGCTTTATTGCACCAGGTTTAAACCTAAAACAGCTTAACGTTAAAACAGCACTTAAAACTGCTACTGCCGAATGAATGCGGAAACTGGATGCTGTTTTTCTAAAACTCTGaagatgttttttaaatataattttgtttgacCATAATTTCTGACTATTTGACTAGTTAGTTTTACCATAAGACTGTCAGACATTCCTCTTGTGCAGTGACTTTTTGAGAATGACTGGGGAAATTATTAAGGATTTCTTAACAATGTGATGTGATCTACAAATGATGGTCACTATCAAGATATTCTTCAGAGATCACTTTCATTTTTCAGCCATATGGACGTCCGTGTTGGAAGGATGACAGGTCTAAGGAAGTGATGTTGGAGTCTTCAGTtaacaataagaaaagatgcatcCCGAGTTCTCTGACACAATTGTGCAAACAGCTTGAGGACAGAATCATGCAGATATCACAGCGTTACTCCATCTGTGATGAAGACCGACAGTCTCTGACTGCAGTGCTGTCCTCTGAGCTGGCTCTGATTTGGCAGGACCTGAAAATCCGTCCCGTGGACTCCACACTGAGCCGGGATGAGAAAGTGCAGCTGCATCGCCAGACCTTCAGCGAGGTTCTGCACATCTGTGAGCAGCTGTTTCTGCGCTACCTTCACCTGACAGAGACTCTGCGGAGGCGAGGGGTCTTCAGCGATTGTGCCAACCGCAAGAGGCTGGCAGCTCAGTTGGCCGTGGACTGCACCAGTCTCTTGAATATTCGTTCAATACGATGCCGGATTGTCACAGGAATCAAGGCTATGAGGAGTACTGTAATACAGCAAAAAGCTTTACAAACAGAGACGTGCACACAGGAAAAAACTGTGGAGGATGACCTCAGGGAGATTCAGGATAAAATCGGGGAGCTGGATCTACAAAGTGTGTATGACCTTCTGCCCTGCAACATGGAGCAAATCTTATATAAGACCGACAATCAGTGTTCCACAGCAAGCATCTGCAGTACACTAAAACAAGAGCGAGATCAGAGTCCCAATCAAAACCGATTGGTCAGATTAAAGGGATGTCATTCCATGCCAAACCTGCGGAGAGAGAGTCTTCTGGAGGAGCTGGATATAAGGCAGCTTCGTCGGCCTTCATCCCCATTGCTCCTACTGTCCACAGATTCTCCTTCCAGCTTGGAGAAACACATCAGCCCTGGAGAGGATCTGAAGAGATTATTACAGGAGAGCGATAATGAAGACGACTGTAACTGTGAGGCAGATCTGTTCCCACTTATAGATGCGTTGACCTTCTTTAACTCTAGCAGACTCCAAAAGCTCAAAAAAAGACTACTGAAAATGAAAGAGGaagtaaaggaaaaaaagaagGGCAGAGCTGTGGAAAAACAATTGCGTGCACAAGGAGACGTGGTCAGTGTGGCGTTTACCCCTCAAACCATCATGCGCACTGCCGCGGTCAGAGTGCCTGATTGGGTTTTTCCAGAGACCCTCAAACTCAGGATGTGCCCACCAGTCTACAATGATCTCACTAAAGAGATTGATTCGGCATCGGTTCTTCAGATGGATCAGAACTTGATTGAACAAAAACAGGAGATGAGCAATGTCTATGAGGAATTATTTAAGAATATTTCAACAAAGTATTTTGACTTTGAAGAGGATCCCACTATCGAGCCTTCCTTGAAAAATCCCTTATGTCTACCAAAAAGAATAGTTAATGACAAACTAATAAACCAATCACTCAGGAGGCCCAATCCATACAACATATCCCACAGAAAGAGAATCGAGAGGAATGTAAACAGAAAGAGGCCTGAAGATGTGACCACAAGAGCGTACAGAGCCTGGTTCCAATGGTGGAGGTGTCAACTATCACTAGATGATTATCTGGACTACATTTCCAATCAGGACTCTGATTATCTGCCAGTTCTGTTTCACTTGTATGACAGTGACGATGATGGTGAAGAGGCAGAGAGACACAAGTTGGATCAACTCCAGAAAGCGGAGAGGAGAAGAAAGCAGCAGGAAAGGATCGATTCACTTAGGAGATGCAAACAGGAGTTTGTTCCTGGGTTCTGGAACATCAACACTATAGAGATGGGGGGACTGGGGAGAGAACCAGAACTGGATGAGAGAAAGTTTGAAGAGGATGTGGAGGGTGAAGGTCCAGCTTCTGGTCTGCTGGATACTGAACAGTTGCAGCTCAGGCTGGAAAGGGTCTGGAATGCCCTGCATCTGCCAGAAGGACAGCGACTAGACATGGCCATTAAATACAGCTCATACGAGCACAGGGACCATCTGCAGGAgGCTATTGCTGCATGGGAGCAGGCCACCTGTTTGATCCAGAAGAGGGAGCTCTTGCTTTCCAGGTTGGAGGACTTTGAGAAGGAGGCATCTGATCCCAACAGATTTTTCCAGCCGGGTTTTCCTGGCTCATCTATGGCTAGAATGGAGGAGGCGACTCAAAGGGAGAAGCTCAACTCTCAAATTTCAGTTGTAGATGAGGAACTGTCCCAGATAATAGGCCAAATCACAACCCGTTTTCATGACAACATCAGCTATAAGGTGAGAGCGTGACTGTTTGTATACACTATTGTTAATTTGCTTGCAGTTGTCCTTCTTTGTCATTGTTTTTGGCTGTCCCAGGGTCGCCCATACAGGGAGAAGATGCGCTGGGACCGGACTGAGATGTTGTACTGGCTGCAGCAGGAGAGACGGGTTCAATCTCTGGAGATGTTTCTAAAAGGACAGACAGCTCTACCTGTAAGGCTTCCTCCTCTCAGTCAAAGTCAGGAGCTTTACCCGGGCAACCATCAAAACCTACTGGAGCAACCTACATCAGACTGTGAGAGAAGTGGGAGAATATTACAACACTGTGAACTCTAATGACAAATGTAACAACTTAGTTCTAGTTCAGTTCTATGCAAATAAAGCAGGTTCTGACAGTTTTTTACCGAACTGATTGTTTCTATACTGTTTAGGTAAAAACATTCAAAAGCTGAAGACTCCATACACATTGATCAACATTTGatcaatattttttcttatttcttatttgtAATTAAACCCCCTTGGAATTAGAAGATGTacacttttttatgtttgaaatatTGCAAACTTATACTGTATTATGTGTCATGCCAATATAATTACTACAGAACTAatgattttaaatgcatgttatttgtaaataaatattatatgccAGTG
>TCONS_00053585
GCGTGACCAGAGTTTCCAGGGTAACGTCGCTTGTTAGTACACCGACATGCACAGGCGGAACTTTAGCCACATTTCGATAAACTATATTTTTGTCTTGATTTTGATCTTCAAACCACAATACATAATAGTCTAGTTAATTTTTAAACCGtttgtattgtaatttaattataaatatactttACTAGTACTGTTTTGACATAAATCACGTGATGTTCACTAAAGAGCTTTATTGCACCAGGTTTAAACCTAAAACAGCTTAACGTTAAAACAGCACTTAAAACTGCTACTGCCGAATGAATGCGGAAACTGGATGCTGTTTTTCTAAAACTCTGaagatgttttttaaatataattttgtttgacCATAATTTCTGACTATTTGACTAGTTAGTTTTACCATAAGACTGTCAGACATTCCTCTTGTGCAGTGACTTTTTGAGAATGACTGGGGAAATTATTAAGGATTTCTTAACAATGTGATGTGATCTACAAATGATGGTCACTATCAAGATATTCTTCAGAGATCACTTTCATTTTTCAGCCATATGGACGTCCGTGTTGGAAGGATGACAGGTCTAAGGAAGTGATGTTGGAGTCTTCAGTtaacaataagaaaagatgcatcCCGAGTTCTCTGACACAATTGTGCAAACAGCTTGAGGACAGAATCATGCAGATATCACAGCGTTACTCCATCTGTGATGAAGACCGACAGTCTCTGACTGCAGTGCTGTCCTCTGAGCTGGCTCTGATTTGGCAGGACCTGAAAATCCGTCCCGTGGACTCCACACTGAGCCGGGATGAGAAAGTGCAGCTGCATCGCCAGACCTTCAGCGAGGTTCTGCACATCTGTGAGCAGCTGTTTCTGCGCTACCTTCACCTGACAGAGACTCTGCGGAGGCGAGGGGTCTTCAGCGATTGTGCCAACCGCAAGAGGCTGGCAGCTCAGTTGGCCGTGGACTGCACCAGTCTCTTGAATATTCGTTCAATACGATGCCGGATTGTCACAGGAATCAAGGCTATGAGGAGTACTGTAATACAGCAAAAAGCTTTACAAACAGAGACGTGCACACAGGAAAAAACTGTGGAGGATGACCTCAGGGAGATTCAGGATAAAATCGGGGAGCTGGATCTACAAAGTGTGTATGACCTTCTGCCCTGCAACATGGAGCAAATCTTATATAAGACCGACAATCAGTGTACGGCAAGACATACAAATACATGTTTTGCCTTTATGTATGCAACTACATGTTGTTTTAAAGAGACCCAAAAACTACTACTAATGCTTAAAGAAGCCTTGACCTTCTTTAATTCTAGCAGACTCTAAAAGCTTGTGACCCTCAGGCCATTCAAGAATAAGTAGACTGTCTATTTCTTCAGTAAAGCATTTCAAACCTTT

Function

symbol description
ccdc87 Orthologous to human CCDC87 (coiled-coil domain containing 87).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-118 Orthologous to human CCDC87 (coiled-coil domain containing 87).

Ensembl:

ensembl_id ENSDARG00000045683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053584 False 3426 mRNA 0.43 18 13615731 13624294
TCONS_00053585 True 1399 mRNA 0.41 5 13615733 13617953

Neighbor

gene id symbol gene type direction distance location
XLOC_027192 tnpo3 coding upstream 10573 13586455 ~ 13605158 (+)
XLOC_027191 NA coding upstream 29548 13584054 ~ 13586183 (+)
XLOC_027190 calua coding upstream 39516 13568469 ~ 13576215 (+)
XLOC_027189 NA coding upstream 122375 13489682 ~ 13493356 (+)
XLOC_027188 NA coding upstream 145834 13468591 ~ 13469897 (+)
XLOC_027194 pnpla8 coding downstream 1598 13625892 ~ 13643616 (+)
XLOC_027195 nrcama coding downstream 72243 13696537 ~ 13728375 (+)
XLOC_027196 cntn1b coding downstream 109544 13733838 ~ 13756716 (+)
XLOC_027197 pdzrn4 coding downstream 186517 13810811 ~ 13861445 (+)
XLOC_027198 NA coding downstream 252610 13876904 ~ 13890091 (+)
XLOC_027184 BX470116.1 non-coding upstream 341096 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 417866 13178158 ~ 13197865 (+)
XLOC_027200 CU469420.1 non-coding downstream 482217 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 non-coding downstream 492072 14116366 ~ 14119559 (+)
XLOC_027202 NA non-coding downstream 525766 14150060 ~ 14158028 (+)
XLOC_027203 NA non-coding downstream 538049 14162343 ~ 14167862 (+)

Expression


Co-expression Network