XLOC_027194 (pnpla8)


Basic Information

Item Value
gene id XLOC_027194
gene name pnpla8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13625892 ~ 13643616 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053586
AACGTTTCCTGTCAAATCTTCCTTTCGGGATTGACACAGCTCACCGCTTTCAGTTATTTCTGATCGAAATGACAGCGAATAATCAGCAATGGACGgATCACCTTTAAAATGAGAAGATTTCCCACCTCATATAGAAGCACAGTTATCAAGCAGATGTGAAATGGCTACAACTTTCATCTGCAGGGCTCAGCTGCTCTAATGCCAGATCCACACTTCAGGAGTATCCCAGAATTCCCTGTAATAACCCCACCGCATGTCGCGCATCAGGAGCACACTGGACACCGTTACCAAAGCCGTGAGCGGGACGGTGAACACAGACCTCCTCTCTAAAATCACACGCCTCAAACCAGGAAAAGCTTTAGAGGTCAAGGTGGAATGTCCTGCCGTGGAAGCCGAGGCCGGAGCGGTCATGACTGTGGCTGCAGCTGAGCCACAAATGGAGAAAGAGGGGAAAAAAGACATGGAAGACTCCCCCAAATCTGGAAACGCATCCAGCACGGgtgcaaagcaaacactacagcGCTTCCAACCCTCTGCGTTCACAACCAACATGGACGAAACATACAATCACCTGGCTGAACATGTCAATACCTACTTTGGAAGTGATGACAAGCGGTTGGACAGAGGAGAATCAACACCATCTCAAATCAAACCTCTTCCCAAAGTGAATAAAGATCATATTATAGCAGCGCCTGTGTGCCATAAATCTACACCTGAAGCTAATCCTGCTATTGATAAAAACAGCTCTGTCCCACAAGCACCGTCCATTCCAGTTCAGGATGAGGGGGTTTCGTCTGTTCCCATTTCACCGAGAAAAGGCATCAGTCATTATCTGTCATACCCTAGGCCCAGCGTTCAGGCTTTTGTTGGGAACTATATTGCGCCTCTGGTACCGAAGTTCAGGGCGGATGCAAAAAGTGGTGCAGGGGAGAAGGACAAAGCCTCTGGATCTGAACCGGATGTGTCTCAGGATGTAAAGAAAGCAGAGAGCAAGGAGCAGAAAGAGGCTGAGGAGAAAGCACAGAGACTGCTGTCTCAGAGGGAGAAGATTATAGCACGTGTTAGTGTGGATAACCGGACGAGAGCGCTGGTCAAGAGTCTCCAGCGTGTCACTGATGTGAAGATCACCATCAGCCGAGTGGAGGAGCTGAGCTTCCACCTACTGGAGTTTCCAGAGACCAGAGGAGTCGCGGAGAAGGTCGTCCCATGTCTGTTGCGTCTGAGGCAGGCGAGAGATGTCAGTCTGCAGGCGGCAGTCAGACAGGCTCTCACTCTGGTGGGATACATTGATCCGGTCAAAGGCAGAGGGATCCGTGTGCTCTCCATTGATGGAGGAGGAACCAGgGGTTTGGTTGCATTACAGGCTTTGCACAGGCTGGAGAGTTTGACCGGGAAGCCTATTTACCAGCTGTTTGACTACATATGTGGAGTTAGCACAGGGGCCATTTTGGCATTTATGCTGGGTGTGTTCCAGATCCCCCTAAAGGAGTGTGAGGAACTGTATCGAAAGTTAGGATCTGATGTCTTTAAGCAGAATTTAATAGTGGGCACAGTGAAAATGGGCTGGAGTCACGCATACTATGACAGCCAGATGTGGGAGGAGATCCTCAAAGAAAAAATGGGGCATGGACTTATGGTTGAGACCTCCAAGAACCCAAACTGCCCCAAGGTGTCAGCAGTGAGCACGGTAGTGAACAGAGGCCTGCCACTGAAAGCGTATGTCTTCAGGAATTACAACTTCCTGCCAGGGGTTCGTTCGCACTACTTGGGCAGCTGTCAGCATAAAATGTGGCAGGCCATTCGAGCATCGTCCGCCGCTCCAGGATACTTCCAAGAATTTGTGCTAGGAAATGACCTTCACCAGGACGGTGGTCTCTTGATCAATAACCCCACAGCTCTGGCCATCCATGAGAGCAAGTGTCTGTGGCCAAACACACCAGTGCAGTGTGTGGTGTCTCTGGGCACAGGTCGATACGAAACCGCCACCAAGACCAGCGCGAGCACTTATACCAGCCTGAAGACCAAACTCACCAATGTCATCAGCAGCGCCACAGACACAGAAGAGGTCCACACAATGCTGGACGCCCTCCTCCCCCCGAACACCTACTTCCGTTTCAACCCTTACATGAGTGAGGACGTCCCGTTAGACGAGAACAGACAAGAGAGGCTGGACTACCTGCAGGCTGAGGGGCGTCGTTACCTGGAGCGCAATGAGAATAAGCTAAAGAAAGTGGCTAGTGTCCTCACGCAGGAAAAAGGTATCGTTCAGAAGCTCGCAGAATGGGTACAACTCAAAGCTGACATGTACGACGGCCTTCCCTTTCGCTCTAAACTCTAAAACCCACACTCTAAACCAAACTAGCACAACCCCTGACGTTTTCCGTGTAGTGTTAAAAACAATGCAAACTGTGTACTGCAGTGGAAAGGAGTGTTACCGTGCCATTTGATAACTGAAAATAGGGAATCAAGTCTATTGCCTCATATTGACGAGCACATTAGAAGGTAAATTGGTTCATCTGGTTtgatttatacattatatatatatatatatacataaatatttaccTTGTGGATCTTATTTGAAATGAAGAGCCTCGCAAGCATGAAATGTTAGTGGCAATGCTAACTAGCTAACATTTgagtttgctgtttgtttgttccTACTAATGTCATTTTGAGTCTGAAATAGTATAAAATTGCTGTTGTGTAGtgttttcacttaaaaaaaaaaaagtttcaagacAATACTGCGAGTAGTTGACTAAACTAACACTACTGTAGTTAGCATGAGGTGCTACTAGATGCACAGACTGAAGTGTGTGTAAATAATGTCCAATCAAACGCAAACTGATGT
>TCONS_00053587
CTTTGCACAGGCTGGAGAGTTTGACCGGGAAGCCTATTTACCAGCTGTTTGACTACATATGTGGAGTTAGCACAGGGGCCATTTTGGCATTTATGCTGGGTGTGTTCCAGATCCCCCTAAAGGAGTGTGAGGAACTGTATCGAAAGTTAGGATCTGATGTCTTTAAGCAGAATTTAATAGTGGGCACAGTGAAAATGGGCTGGAGTCACGCATACTATGACAGCCAGATGTGGGAGGAGATCCTCAAGTAAGACAAAGTTCACATAACTATTTGGGAACTCACAGTTTTGATTAATTAAGTTTTGCTTGGTTTATGAGCAGAACagtttaattattattcagttttgttttaattaacatGTTAAGCAATTAGACCTGTTTGGtccaattttaatataatttaaactttttatttaattaaataaatgaaaatatagagAATAACATAATAGATCATGGCTTCTCAgtttcagtcctggagggccggtgtccataaAGAGACACATatacattgaaataaaaataagaccCCACTAAAAATACAAACACCACAA
>TCONS_00053588
TACGAAACCGCCACCAAGACCAGCGCGAGCACTTATACCAGCCTGAAGACCAAACTCACCAATGTCATCAGCAGCGCCACAGACACAGAAGAGGTCCACACAATGCTGGACGCCCTCCTCCCCCCGAACACCTACTTCCGTTTCAACCCTTACATGAGTGAGGACGTCCCGTTAGACGAGAACAGACAAGAGAGGCTGGACTACCTGCAGGCTGAGGGGCGTCGTTACCTGGAGCGCAATGAGAATAAGCTAAAGAAAGTGGCTAGTGTCCTCACGCAGGAAAAAGGTATCGTTCAGAAGCTCGCAGAATGGGTACAACTCAAAGCTGACATGTACGACGGCCTTCCCTTTCGCTCTAAACTCTAAAACCCACACTCTAAACCAAACTAGCACAACCCCTGACGTTTTCCGTGTAGTGTTAAAAACAATGCAAACTGTGTACTGCAGTGGAAAGGAGTGTTACCGTGCCATTTGATAACTGAAAATAGGGAATCAAGTCTATTGCCTCATATTGACGAGCACATTAGAAGGTAAATTGGTTCATCTGGTTtgatttatacattatatatatatatatatacataaatatttaccTTGTGGATCTTATTTGAAATGAAGAGCCTCGCAAGCATGAAATGTTAGTGGCAATGCTAACTAGCTAACATTTgagtttgctgtttgtttgttccTACTAATGTCATTTTGAGTCTGAAATAGTATAAAATTGCTGTTGTGTAGtgttttcacttaaaaaaaaaaaagtttcaagacAATACTGCGAGTAGTTGACTAAACTAACACTACTGTAGTTAGCATGAGGTGCTACTAGATGCACAGACTGAAGTGTGTGTAAATAATGTCCAATCAAACGCAAACTGATGTTCATAATTGtccacatttatttatatcaAACCTCAAAGGGAACCAACGGCACTGACCTTTAAAAGATTTTGCACAAGAAAGCACTTACTGCAGTTGTATCTTTAATTTAGCATTGATTACTGTGGAAATGCTAATCAGCTAATCCATAATTTTGGATATTATGTTTGAAAGCCTCAGCTGTATTTCAGTATACATTTTCATTTGCTCCTATGCGCACTTGACTGgaaaatattttagttaatttattgGTTCTGTTCGGATTGAGTGTGATTTCTTGTAAAATACTATTAATCCTTGAATGCGATGAGTGAGATTATGACTGTGTTGTCAATTCAGTTTTAACCGCAAATGCCCTTTTCCGAATAACACCTTAAAGTTGTGATTGTGAGGAAAAATAAACGATTTTAAATCTC

Function

symbol description
pnpla8 Predicted to enable calcium-independent phospholipase A2 activity. Predicted to be involved in arachidonic acid metabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in membrane. Orthologous to human PNPLA8 (patatin like phospholipase domain containing 8).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0019369 arachidonic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0047499 calcium-independent phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-553 Predicted to enable calcium-independent phospholipase A2 activity. Predicted to be involved in arachidonic acid metabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in membrane. Orthologous to human PNPLA8 (patatin like phospholipase domain containing 8).

Ensembl:

ensembl_id ENSDARG00000078745

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053586 False 2854 mRNA 0.48 10 13625892 13643203
TCONS_00053587 False 554 lncRNA 0.37 2 13631014 13631677
TCONS_00053588 True 1295 mRNA 0.39 2 13640903 13643616

Neighbor

gene id symbol gene type direction distance location
XLOC_027193 ccdc87 coding upstream 1598 13615731 ~ 13624294 (+)
XLOC_027192 tnpo3 coding upstream 20734 13586455 ~ 13605158 (+)
XLOC_027191 NA coding upstream 39709 13584054 ~ 13586183 (+)
XLOC_027190 calua coding upstream 49677 13568469 ~ 13576215 (+)
XLOC_027189 NA coding upstream 132536 13489682 ~ 13493356 (+)
XLOC_027195 nrcama coding downstream 52921 13696537 ~ 13728375 (+)
XLOC_027196 cntn1b coding downstream 90222 13733838 ~ 13756716 (+)
XLOC_027197 pdzrn4 coding downstream 167195 13810811 ~ 13861445 (+)
XLOC_027198 NA coding downstream 233288 13876904 ~ 13890091 (+)
XLOC_027199 pphln1 coding downstream 257842 13901458 ~ 13963440 (+)
XLOC_027188 NA non-coding upstream 155995 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 351257 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 428027 13178158 ~ 13197865 (+)
XLOC_027200 CU469420.1 non-coding downstream 462895 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 non-coding downstream 472750 14116366 ~ 14119559 (+)
XLOC_027202 NA non-coding downstream 506444 14150060 ~ 14158028 (+)
XLOC_027203 NA non-coding downstream 518727 14162343 ~ 14167862 (+)

Expression


Co-expression Network