XLOC_027196 (cntn1b)


Basic Information

Item Value
gene id XLOC_027196
gene name cntn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13733838 ~ 13756716 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053592
ATTCACAAATGCTTGAAATCACCTTGACAGCTTTGCGACCCTCTGCAGAAGCACATGGACTCGGTCAGCATCCCTCTGTGCTTCAGCATCCAGACATGCGCAGCTCCGCGCTCCTCCAATAGCaggccgtgtgtgtgtgcgtctcgCGCCGGGCTGCGGGACGGGGCGCTGCTTGGCTGGTGGATTTAACGCGTTTTTCTGGTCTGGTTTTTGGACTGCTGGATCAAGATGGCGACCCCAGGCCCAGCCATGCTATTGTCTCTTTTCTCCTGCTTCTTCCTATTAGCAGCTGCAATTAAACCCAGGATCTTTGAACCCAGGATTTTTGACAAGGAGGCCACTGGCTTTGGGCCCATATTTGAGGAAGAGCCTCTGGACACTGTGTACGCGGAGGATTCACCTGAAAACAAAATATCTATGAACTGCAGGGTGCGTGCAAACCCACCGGCCATTATCAAGTGGTGGTTAAACAACTGGCAAATTAAGCTGATGGAGCAGCCAGATGAGCACTTCAGCCTGGTTGGAGGAAACCTGGTCATTACAAACCCAGAAAAAAACAAGCATGCTGGAAAATATGTATGTGTGGCCAAGAACGTGTACGGCACCGTCATGAGCAAAGAGGCCAACGTCAAGTTTGGATACCTGAACCAGTTTCCTACAGATGAGAGAGAGCCGGTGAATGTGAAGGAAGGACAGGGAGCTGTTCTGCTGTGTACACCTCCCTCTCGCTATCCAGATGAGGTGATGTTCCGCTGGATCTACAATGACTTCCCTAACTTCATCCTCCCAGATCAGCGGCGCTTCGTCTCTCAGAGCACCGGGAATCTGTACATTGCGAAAGTCGAGCCGTCTGATGTCGGCAATTATTCCTGTTTTGTGTCGAGCCCCACCATCGGCAAGAGTGTTTTCAGCATGCCTATAGCTCTGATTCCACAGATAGAGAAGGAAGTGAAGCGATATCCTGCTGATATCCGGGTGAAATTTCCTAAGACGTATGCTTTGGTGCACCAGAACATCACTCTGGAGTGCTTTGCACTTGGAAATCCTCTTCCACACATTCGCTGGAGGAAGCTAGACGCTGATCTCCCGCCAAACTATGAAGTCAGCATGAATGGAGCTTTACTTCACCTGATCAACGTCCAGTATGAGGACGAGGGCAGCTACGAGTGTGAGACGCTCAATGTGAAAGGGATGGACTGGTATCGACAGTGGCTCTATGTTGAAGGTCCTCCAGAGTGGGCGGAGCACATCAATGACACGGAGAAAGATGTCGGGAGTGAACTGACTCTCAGATGTGTTGCTGTTGGGAAACCAATACCATGGATACGTTGGCTAAAAGACGGCTATTCGTATGGCAAAGGGGAGCTGAAGTTTTCCAGTCTCACGTTTGAGGATTCGGGCATGTATCAGTGCATTGCTGAGAATGAATGGGGAACCATCTACGCCAATGCAGAGCTTCGGGTTGTCTCCTGTGCTCCGACGTTCATATATAACCCAGTGAAGAAGATTCTGCTTGGGGCTGAAAATGGACGTGTGGTCATAGAGTGCAATCCCCGTGCTGCTCCCAAACCCAGATTCATCTGGAAACGAGGCTCGGAGCTCCTGAGCAACTCCTCAAGGATATTCATTTGGGACGATGGAAGTCTGGAGATTCTGAATGCAACAAAAAGTGACGAGGGCTCATACACCTGCTATGCTGAGAATGATCGTGGCAAATCCAACAGCACTGGGACCCTCACTATTACTGAGGCCACCAAGATCACAGTTGGCCCATCAAACTCTGAGGCAGCTGTAGGGGATACAATAGTTCTCCAATGCTCTGCATCCTATGATCCCAGTCTGGACGTCACCTTCATCTGGACTGTCGATTCATACATCATTAACTTCTACACAGACTTTGAACACTACGAGCTGGACATGGATCATGAGAATAGCGGAGACCTGCTGATCAAGAACATTCAGATTAGACATGCAGGACACTATATCTGCACAGCTCAGACTATAGTGGACAACGCCACCGCAGAAGCTGATGTTTTTGTCAGAGGTTTGCCTGGTCCTCCAGGTGGCGTCCGTGTGGAAGAAATCGGCGACACATCAGTTAAAATACGATGGTGTTTGGGATCAGATCACGGTAGTCCTCTCATCCAGCATATCGTGCAAACAAGAGACTTTTACGCCCTTGATCCTGAAGACTGGAAAACCGCAACTACCACTCCTGCGTTTCTGAATGGATCTACAGAGTCAGCCACTGTAGTTGACCTGTACCCCTGGATGCAATATGAGTTCAGAGTGCATGCCATCAATGAATTCGGAGCTGGTGAAAACAGCCGTCCGTCCATTAAAATCAAGACATGGGATGCCAGGCCAACAGTAGCTCCTTCTGACGTCATTGGACAAGTGGGAATAAGCGGAGAGTTGATCGTGACTTGGAATCCTGTGAAACCTCAGTTTTTCTTTGGGAAGAAGTTTGGCTATGTTGTGGCGTTCAAGCAGCATGAGGATTATGAGTGGAAATGGTCAACCGTGGAGGATCCCGAGACCAGACGTTATGTGTACAAAGAGAGCATGACACCAGATACTGAAATACAGATCAAAGTCAGCACCTTCAATAACAAAGGAGAAGGACCCGCAAGTCTTATATCAGTGGTTTACTCACCAAGAATAGCACCGACTGAAGCCCCACTAGATGTGTATGCCCGTCAGGTCACCTCCACAGAGGCTTTAGTCTGGTGGTTACCAGTCTACCAGGCACCACCAATGTGGGTCGACGGATACCAAATACGCTACTGGAGAAAATACGATGATAATGAAGCTGCTGCATCTCGAGTCATTGTTCACAGAACTGTAAACCAAACCCGTCTGGAAAACATGCGACCTGATTCGCATTACCTTATTGAGGTGCGAGCGTTTAATGGAGCAGGACTGGGACCACCAAGCGAACACTGTGAAATGTTTACCAGAAGACCCCCCCCAAGTCGTCGTTTGAGAGTTTACAAGTATGTCAGCTTTACACGCAAATGGCTGTATCTGTATTGGGATCACATCTATAACTACTGGAATGAGTCTTATGTGGAGGGGTACAAGATTTTGTTCCGGAAGGAAGGTGAGCGTTATGGGAAGCTTTACACCACCGGCAGGCACTACATTGACTTCCCCATGCCAGAAACTGGTGATTACGTCATAGAGCTGCGAGCTCGCTGTGAGGGAGGAGATGGACCCATTTCACAGATCAGAGTACAGGGTAAAGCAGCCGTGGGTGTTGAATCTGTCAGTGTGGTCTCTGTCCTGCTGCTGGCTCTTGCCTGGACCACTTTAGGCctgtaggcaaaaaaaaaaaaaaaagactgtcaaaCCTTGCAAAATCCCTCCGAGATGAAAACATATGGTCCGAACAGGACAATCTCATGGTGCAAATGAAGTTTGTTTGAGAGTGTAACGAATATAAAGAATgtgtttgtataaaataaaatagccacaatcaatcaatgaaatggtgttgtaaaataaacatatacagtatagTAGCAGGAGTTGGTGAATTTTTGATGGCTTATTCAGacactgtataatatatttattcattcccAGCAAACAATctttgtttaatagacatctaatacaCATCTAGGTGTAAACAGCTTGGCTAAGACAAGGTTacacttgggctgtcagtgaaaatctaatagacatcgaagaatagcccaaaactagctaTATGAATAACTACTTATTCAttcctgtttatttgatgactagtctagttttggcctattgttagacgtctattagattttcactgacagcccaaatttagccttgttttagtcttgttttagccatgtttagatgtctattagacatctaagaatagtccATAACTAgaatagtcatcaaatagacagattagacagatttatatgtgtagtcattcatttctgtttgtttgatgACTAGTTTGGGCTATTCTTATACAAGACAAATCTTATataagattttcactgacagcccaaatttagccttgttttaaccaagacaactatgtttaggcgtttattagacattttttaaaaacaaaaaatgcttgctgggttcattcatttatttagtttttgtttagttaTGCTTTGGAATTGTGTTATGGGACCTTCATCTGTGCTCCATCAAGTTTCAATGTGAATATTTAACTCTGtactttaacaaagtgacttttatagatttttttttttttgtagtagttTAAAACAATAGATTGTATAAGACTTAATAATGATGCACAATTACAGAAAATTCTAGCCACACATTGTAGATTTTGTAAAATCATTTACATGATCAACAAAGTTTCAAACAATTcaaaatcactttgttaaacttttcaaCATTAACATTTGTTGGAGCAGAGATTAAGTTCGTAAttgaaaagcataaataaaaaacacccaCTAATCACAAAAATCTACAGGAATTACTGTAAATGAGTGGATTGTAAATTAGtgaatgtatttattaaacataacATCTTTTTTAGTCATTTTCCATGTCATCAGCGGCACAACTGCACCATtaaaattgtttagtttttttgtttatgcACTTGGCTTTCAGCTTATTTTTTACGTTTGGTAATATTTATAAAACCACTGTTTGATTTTAAAGTGACTTCCCTAGATTTTTTCCACGTATTTTAAATGATTCACACTGCTATTTTCACCTGTAGCTACTGTACATcagtaaatatt
>TCONS_00053593
ATTCACAAATGCTTGAAATCACCTTGACAGCTTTGCGACCCTCTGCAGAAGCACATGGACTCGGTCAGCATCCCTCTGTGCTTCAGCATCCAGACATGCGCAGCTCCGCGCTCCTCCAATAGCaggccgtgtgtgtgtgcgtctcgCGCCGGGCTGCGGGACGGGGCGCTGCTTGGCTGGTGGATTTAACGCGTTTTTCTGGTCTGGTTTTTGGACTGCTGGATCAAGATGGCGACCCCAGGCCCAGCCATGCTATTGTCTCTTTTCTCCTGCTTCTTCCTATTAGCAGCTGCAATTAAACCCAGGATCTTTGAACCCAGGATTTTTGACAAGGAGGCCACTGGCTTTGGGCCCATATTTGAGGAAGAGCCTCTGGACACTGTGTACGCGGAGGATTCACCTGAAAACAAAATATCTATGAACTGCAGGGTGCGTGCAAACCCACCGGCCATTATCAAGTGGTGGTTAAACAACTGGCAAATTAAGCTGATGGAGCAGCCAGATGAGCACTTCAGCCTGGTTGGAGGAAACCTGGTCATTACAAACCCAGAAAAAAACAAGCATGCTGGAAAATATGTATGTGTGGCCAAGAACGTGTACGGCACCGTCATGAGCAAAGAGGCCAACGTCAAGTTTGGATTCTTAGTTGTACTTTGTTCTGCAGACCTGAACCAGTTTCCTACAGATGAGAGAGAGCCGGTGAATGTGAAGGAAGGACAGGGAGCTGTTCTGCTGTGTACACCTCCCTCTCGCTATCCAGATGAGGTGATGTTCCGCTGGATCTACAATGACTTCCCTAACTTCATCCTCCCAGATCAGCGGCGCTTCGTCTCTCAGAGCACCGGGAATCTGTACATTGCGAAAGTCGAGCCGTCTGATGTCGGCAATTATTCCTGTTTTGTGTCGAGCCCCACCATCGGCAAGAGTGTTTTCAGCATGCCTATAGCTCTGATTCCACAGATAGAGAAGGAAGTGAAGCGATATCCTGCTGATATCCGGGTGAAATTTCCTAAGACGTATGCTTTGGTGCACCAGAACATCACTCTGGAGTGCTTTGCACTTGGAAATCCTCTTCCACACATTCGCTGGAGGAAGCTAGACGCTGATCTCCCGCCAAACTATGAAGTCAGCATGAATGGAGCTTTACTTCACCTGATCAACGTCCAGTATGAGGACGAGGGCAGCTACGAGTGTGAGACGCTCAATGTGAAAGGGATGGACTGGTATCGACAGTGGCTCTATGTTGAAGGTCCTCCAGAGTGGGCGGAGCACATCAATGACACGGAGAAAGATGTCGGGAGTGAACTGACTCTCAGATGTGTTGCTGTTGGGAAACCAATACCATGGATACGTTGGCTAAAAGACGGCTATTCGTATGGCAAAGGGGAGCTGAAGTTTTCCAGTCTCACGTTTGAGGATTCGGGCATGTATCAGTGCATTGCTGAGAATGAATGGGGAACCATCTACGCCAATGCAGAGCTTCGGGTTGTCTCCTGTGCTCCGACGTTCATATATAACCCAGTGAAGAAGATTCTGCTTGGGGCTGAAAATGGACGTGTGGTCATAGAGTGCAATCCCCGTGCTGCTCCCAAACCCAGATTCATCTGGAAACGAGGCTCGGAGCTCCTGAGCAACTCCTCAAGGATATTCATTTGGGACGATGGAAGTCTGGAGATTCTGAATGCAACAAAAAGTGACGAGGGCTCATACACCTGCTATGCTGAGAATGATCGTGGCAAATCCAACAGCACTGGGACCCTCACTATTACTGAGGCCACCAAGATCACAGTTGGCCCATCAAACTCTGAGGCAGCTGTAGGGGATACAATAGTTCTCCAATGCTCTGCATCCTATGATCCCAGTCTGGACGTCACCTTCATCTGGACTGTCGATTCATACATCATTAACTTCTACACAGACTTTGAACACTACGAGCTGGACATGGATCATGAGAATAGCGGAGACCTGCTGATCAAGAACATTCAGATTAGACATGCAGGACACTATATCTGCACAGCTCAGACTATAGTGGACAACGCCACCGCAGAAGCTGATGTTTTTGTCAGAGGTTTGCCTGGTCCTCCAGGTGGCGTCCGTGTGGAAGAAATCGGCGACACATCAGTTAAAATACGATGGTGTTTGGGATCAGATCACGGTAGTCCTCTCATCCAGCATATCGTGCAAACAAGAGACTTTTACGCCCTTGATCCTGAAGACTGGAAAACCGCAACTACCACTCCTGCGTTTCTGAATGGATCTACAGAGTCAGCCACTGTAGTTGACCTGTACCCCTGGATGCAATATGAGTTCAGAGTGCATGCCATCAATGAATTCGGAGCTGGTGAAAACAGCCGTCCGTCCATTAAAATCAAGACATGGGATGCCAGGCCAACAGTAGCTCCTTCTGACGTCATTGGACAAGTGGGAATAAGCGGAGAGTTGATCGTGACTTGGAATCCTGTGAAACCTCAGTTTTTCTTTGGGAAGAAGTTTGGCTATGTTGTGGCGTTCAAGCAGCATGAGGATTATGAGTGGAAATGGTCAACCGTGGAGGATCCCGAGACCAGACGTTATGTGTACAAAGAGAGCATGACACCAGATACTGAAATACAGATCAAAGTCAGCACCTTCAATAACAAAGGAGAAGGACCCGCAAGTCTTATATCAGTGGTTTACTCACCAAGAATAGCACCGACTGAAGCCCCACTAGATGTGTATGCCCGTCAGGTCACCTCCACAGAGGCTTTAGTCTGGTGGTTACCAGTCTACCAGGCACCACCAATGTGGGTCGACGGATACCAAATACGCTACTGGAGAAAATACGATGATAATGAAGCTGCTGCATCTCGAGTCATTGTTCACAGAACTGTAAACCAAACCCGTCTGGAAAACATGCGACCTGATTCGCATTACCTTATTGAGGTGCGAGCGTTTAATGGAGCAGGACTGGGACCACCAAGCGAACACTGTGAAATGTTTACCAGAAGACCCCCCCCAAGTCGTCGTTTGAGAGTTTACAAGTATGTCAGCTTTACACGCAAATGGCTGTATCTGTATTGGGATCACATCTATAACTACTGGAATGAGTCTTATGTGGAGGGGTACAAGATTTTGTTCCGGAAGGAAGGTGAGCGTTATGGGAAGCTTTACACCACCGGCAGGCACTACATTGACTTCCCCATGCCAGAAACTGGTGATTACGTCATAGAGCTGCGAGCTCGCTGTGAGGGAGGAGATGGACCCATTTCACAGATCAGAGTACAGGGTAAAGCAGCCGTGGGTGTTGAATCTGTCAGTGTGGTCTCTGTCCTGCTGCTGGCTCTTGCCTGGACCACTTTAGGCctgtaggcaaaaaaaaaaaaaaaagactgtcaaaCCTTGCAAAATCCCTCCGAGATGAAAACATATGGTCCGAACAGGACAATCTCATGGTGCAAATGAAGTTTGTTTGAGAGTGTAACGAATATAAAGAATgtgtttgtataaaataaaatagccacaatcaatcaatgaaatggtgttgtaaaataaacatatacagtatagTAGCAGGAGTTGGTGAATTTTTGATGGCTTATTCAGacactgtataatatatttattcattcccAGCAAACAATctttgtttaatagacatctaatacaCATCTAGGTGTAAACAGCTTGGCTAAGACAAGGTTacacttgggctgtcagtgaaaatctaatagacatcgaagaatagcccaaaactagctaTATGAATAACTACTTATTCAttcctgtttatttgatgactagtctagttttggcctattgttagacgtctattagattttcactgacagcccaaatttagccttgttttagtcttgttttagccatgtttagatgtctattagacatctaagaatagtccATAACTAgaatagtcatcaaatagacagattagacagatttatatgtgtagtcattcatttctgtttgtttgatgACTAGTTTGGGCTATTCTTATACAAGACAAATCTTATataagattttcactgacagcccaaatttagccttgttttaaccaagacaactatgtttaggcgtttattagacattttttaaaaacaaaaaatgcttgctgggttcattcatttatttagtttttgtttagttaTGCTTTGGAATTGTGTTATGGGACCTTCATCTGTGCTCCATCAAGTTTCAATGTGAATATTTAACTCTGtactttaacaaagtgacttttatagatttttttttttttgtagtagttTAAAACAATAGATTGTATAAGACTTAATAATGATGCACAATTACAGAAAATTCTAGCCACACATTGTAGATTTTGTAAAATCATTTACATGATCAACAAAGTTTCAAACAATTcaaaatcactttgttaaacttttcaaCATTAACATTTGTTGGAGCAGAGATTAAGTTCGTAAttgaaaagcataaataaaaaacacccaCTAATCACAAAAATCTACAGGAATTACTGTAAATGAGTGGATTGTAAATTAGtgaatgtatttattaaacataacATCTTTTTTAGTCATTTTCCATGTCATCAGCGGCACAACTGCACCATtaaaattgtttagtttttttgtttatgcACTTGGCTTTCAGCTTATTTTTTACGTTTGGTAATATTTATAAAACCACTGTTTGATTTTAAAGTGACTTCCCTAGATTTTTTCCACGTATTTTAAATGATTCACACTGCTATTTTCACCTGTAGCTACTGTACATcagtaaatattacaaataaaaatattgcccAACAAAA

Function

symbol description
cntn1b Predicted to enable ATP binding activity. Predicted to be active in neuron projection. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1).

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-236 Predicted to enable ATP binding activity. Predicted to be active in neuron projection. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in Compton-North congenital myopathy. Orthologous to human CNTN1 (contactin 1).

Ensembl:

ensembl_id ENSDARG00000045685

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053592 False 4736 mRNA 0.44 24 13733838 13756690
TCONS_00053593 True 4786 mRNA 0.44 24 13733838 13756716

Neighbor

gene id symbol gene type direction distance location
XLOC_027195 nrcama coding upstream 5463 13696537 ~ 13728375 (+)
XLOC_027194 pnpla8 coding upstream 90222 13625892 ~ 13643616 (+)
XLOC_027193 ccdc87 coding upstream 109544 13615731 ~ 13624294 (+)
XLOC_027192 tnpo3 coding upstream 128680 13586455 ~ 13605158 (+)
XLOC_027191 NA coding upstream 147655 13584054 ~ 13586183 (+)
XLOC_027197 pdzrn4 coding downstream 54095 13810811 ~ 13861445 (+)
XLOC_027198 NA coding downstream 120188 13876904 ~ 13890091 (+)
XLOC_027199 pphln1 coding downstream 144742 13901458 ~ 13963440 (+)
XLOC_027200 CU469420.1 coding downstream 349795 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 coding downstream 359650 14116366 ~ 14119559 (+)
XLOC_027189 NA non-coding upstream 240482 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 263941 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 459203 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 535973 13178158 ~ 13197865 (+)
XLOC_027202 NA non-coding downstream 393344 14150060 ~ 14158028 (+)
XLOC_027203 NA non-coding downstream 405627 14162343 ~ 14167862 (+)

Expression


Co-expression Network