XLOC_027197 (pdzrn4)


Basic Information

Item Value
gene id XLOC_027197
gene name pdzrn4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13810811 ~ 13861445 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053594
ACAGAGAGATCGAGGTGGTACGATGCACGCAAACATAGAGTCATTCATAAGGAATTGTGCTACACCGGGCAGGCAGTTCAGTGCGTGAtttttacacaaaagaagatagggCGAGAGGTACCCACTGATGAGAGACGTTACTCAACATTTGAGGGAAATCCCCAGTGTGCCTACTCGTGTGCACTACTGCCAGAGATCTGTTGGGGGACCCGTGGTGGCGAGATGGGCTGTAACCTGTGCACGCTGCAGAAGAGAGAGGAGCACTACAAGCTGCTGTACGAGATCGCACAGGTGAATGGTCGTGAGTTCTCGAAGTCTGGTCATGATGGGACGGTGGAGGCCCTGCGGAAGGAGCCGATCGTGGTGCAGGTTTTAAGACGTGGCCCATCGTCTGTAACCCAGAGCCTGCAGGAGGTTTGTGTGGTGGACGTTTGCACTCAGACTGACATCACCTTTGAGCACATCATGGCTCTGGCTAAAATGAGACCCTCGACTCCACCGGTGCCAGACATCTGTCCATTCCTGCTGTCCGACAGCTGTCATTCCATTCAGACTATGGAGCATGAATATTTCGATTGTCCAGAATATGTAGCCAGCACTCAGGCAGATGTGGACAGAGCAGTTGAGTTTGAGTGTGAGGAGGTTGAGCTCTGTCGAATGAACAGCCAGGAAAAGCTGGGTTTGACTCTGTGTTACCGCACTGATGACGAGGAAGATACAGCAATCTTTGTTGGTCAGGTCGAGCTCAACAGCATCGCTGCGAGGGATGGACGCATCAGAGAGGGAGACCGGATTTTACAGATAAATGGTCGTGATGTGCAGAACAGGGAAGAAGCGGTTGCACTCCTTTCAAATGAAAATTCAAGATCCATAGTGTTACTTGTCACAAGACCTGAAGGACAGATGGATGGAAACTGGCTTGACGAGGATCATCATGATTTCCTCGAAGAGCTGAAGATGGAGATTTTAGAGGAACAGAAAAAAGAGGGAATCCTTCAAACAGCAGGTTGCATGAAGCTTTCTACAAGGCAGGAGGATGCAAGTACAGATACAGCAACATGCTCCTCCTCCATTCTTGAGAAAGACAGTGGCATGAAATGTAGCTTTGAGGAAAGTTCTGAACATGAGTTTCTGTCTTATCCCCGGACTCAAAAACAACTTCGGGACAGGTGGGAAGCAAGCTCACATTTGGTTCCTATGGACACCATGCAGGAGAAAAAGGGTCAGGATAACAGATTGAGCGAAAACGGGGTGGAATGTGACCATTTTCAGCAACTTCTAGAGCTTAAGTGCCAGATCCGCAATGGTGGAGAATGCGGGTTAGTCTATAGGCGAAGCAGCACTATTGAGTGCAGCCTCACAGAGCAAGGTGGAAGTGGAGTGGCAAGGGAGTTGCACATGCTCAACGAAGAGCTGCGCAGCATTGAACTTGAGTGTCAGAGCATCATGCAAGCTCATCAGTTGCGCAGGAGCAAGCATGACTCACCTAGAATGGATAAGGAAAATCGTCTGCGACGTGGCAAGCTTGCAGATATTAATGAGCATCCTGAAAGACTACAAAGTGAGAAGCTCAGAGATAAAGACAGCTCTAGTGCCTACAATACAGCTGAAAGTTCCCGCTCAACTCCCCTGGGAACAGAAGGATCACCTGATCACTCCTTACAACGTCGAATCCACTTGACCAACCAGAGGAACCTTCGAAGTATGCAGAGTCCCTACAGTAGCCCCATCTTGTCTTTACCCAGCCAAAGTAGCTCCACTTGCAGCCGTGCCCATACCTACACCAGCTCCACACCTCCATTACAGACCCCCATCACCAGTCCCGGATCACAAGGACCCAGCCAGGCCTTCTCCAGCAGTTTGGAGCAAAGTCCCAGCAACCCTTCAGAGTCAGACCCAGCACTTCCTGCTGATGATGAGCGCtgtgagaaagaaagaaacaggAATAGGTTAGCAGCGGCTCGACAATATCATTCGCCCTACCACACCAGCACTACAACAACCCAGCCTCCCAGCACACGCCACTACCAGAGTTACCTTCAGCTCCTACAACAACATTCCTCTTCCTCTCTGGAATACTCCCAAAGTCAGCTTAGCCTCCTCAGCCTCCGCGGACGGCCTGGACCTTCGCAAGCTGGTAGACTTGAATGGAAGGTCAAAGTCCGAGCAGACGGAACCAGGTATGTAGCACGTCGTCCAGCACGAGATCGTATCCTACGTGAACGAGCCTTACGAATAAGGGAGGAACGCAGCGGCGGGATGACTACGGATGATGATGCAGTCAGCGAGCTGAAGATGGGGCGGTACTGGAGCAAAGAAGAACGCAAGCAGCAGCTAGCCAGGGCAAGGGAACAGCGACGCAGGAGGGAGTTCATGCAGAAAAGCCGACTTGAGTGCCTCAGGGAAACTATGGGGACGGCAAGCGGGGAGGTCAGCATCCTGGAGCTCAGCCATAAGAAGATGCTGAAGAAACGAAACAAGAAGATCCTTGACAACTGGATGACCATTCAAGAACTCATGAGTCATGGAGCACGAGCACCTGAGGGCACCAAAGTTCACAATGCCTTCCTTTCAGTCACTACAGTTTAG

Function

symbol description
pdzrn4 Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous to human PDZRN4 (PDZ domain containing ring finger 4).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-237 Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous to human PDZRN4 (PDZ domain containing ring finger 4).

Ensembl:

ensembl_id ENSDARG00000045687

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053594 True 2589 mRNA 0.51 8 13810811 13861445

Neighbor

gene id symbol gene type direction distance location
XLOC_027196 cntn1b coding upstream 54095 13733838 ~ 13756716 (+)
XLOC_027195 nrcama coding upstream 82436 13696537 ~ 13728375 (+)
XLOC_027194 pnpla8 coding upstream 167195 13625892 ~ 13643616 (+)
XLOC_027193 ccdc87 coding upstream 186517 13615731 ~ 13624294 (+)
XLOC_027192 tnpo3 coding upstream 205653 13586455 ~ 13605158 (+)
XLOC_027198 NA coding downstream 15459 13876904 ~ 13890091 (+)
XLOC_027199 pphln1 coding downstream 40013 13901458 ~ 13963440 (+)
XLOC_027200 CU469420.1 coding downstream 245066 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 coding downstream 254921 14116366 ~ 14119559 (+)
XLOC_027202 NA coding downstream 288615 14150060 ~ 14158028 (+)
XLOC_027191 NA non-coding upstream 224628 13584054 ~ 13586183 (+)
XLOC_027189 NA non-coding upstream 317455 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 340914 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 536176 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 612946 13178158 ~ 13197865 (+)
XLOC_027203 NA non-coding downstream 300898 14162343 ~ 14167862 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_04028318_04041538 PDZRN4 coding CI01000020 null 4027498 ~ 4041538 (-)