XLOC_027198


Basic Information

Item Value
gene id XLOC_027198
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13876904 ~ 13890091 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057135
GTGAGCCTGAGAAGCACTGACAGAAGTTTTGAGAATAGGCATAGGcaaatagcatttgttttttttcttttaaaggaaAACCAAGCAAAAAGAGAAGGATTCAGGCCACAGAAGAATCATGTGTGTTGCTGCACCACCTGCTCCAATATTGGACTGTAAATGAAATGGAAAAATCTTGGAGGAGATGCAGACCTTCCATTATGTGTATGTAGTTTATATAAAGACGCCGCTCTTCCATTGATCAGACGCCACATTGGCTGTGTTTGCAGACTCGGACCCCTCGAGCGCCAGCACAATGGAGACGGTTCGTGTGCCAGGTAATTGGCGTCTATGGGGGACAGGTGCTCCCACAATGCATTGGGGCTCAGTGCCGGGTCTCCTTTCACATGGCTGTAATTACCTAATTGAAAAGCTCACTGGGGGGAAATAGAAGCGAGAGATAAGGTCCTTTTCACTGCTTTTTTTGTGTGGCTGAAAAAAACATCTATTTGTTGCCACTTGAGGTAAATATTGTCCAAGGGAGAAATGATGGAAGGGAAAGCAAAGATAGAGGATCCATTGTGAACCAGGGGCCGATTCAGAGAGCCGCTGTTTGATGGAGGACACACAAGATGAGCAAATGGACAATAGACTGAATGATTTCTTTAGTTTTAGCCTCTATGTTCATGCCCTGTCCGTGAACTGCTGTGATAAAAGCGTAGAATGGTTTATTACTGAAGTATGCTTTGCATAAGTTAATGTTTGCTTACTTAATGCACTTTTCtggtcttaaaataaataaatatttggaaTAAGTTCAATATATTGAacttatttttatagttttatatatcactctattatgtattatataatagaTGTTTGCAAGTTTGCATTATTGCGAGTTGatggttaaaataaataaatgcataagttactcacttgccactttattaggtataccttactagtaccgggttggacccccttttgcctacaTAACTACCTTATTTCTTTATGGTATAGATGCAAcatggtactggaaatattcctgcaAAAGTTTGgcccaaattgacatgatagcatcaagcagttgctgcagatttgttgccTGCACATCCATGATCCACAACATCCCAATgctgctctattagattgagttctggtgactgtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057135 True 1154 lncRNA 0.40 2 13876904 13890091

Neighbor

gene id symbol gene type direction distance location
XLOC_027197 pdzrn4 coding upstream 15459 13810811 ~ 13861445 (+)
XLOC_027196 cntn1b coding upstream 120188 13733838 ~ 13756716 (+)
XLOC_027195 nrcama coding upstream 148529 13696537 ~ 13728375 (+)
XLOC_027194 pnpla8 coding upstream 233288 13625892 ~ 13643616 (+)
XLOC_027193 ccdc87 coding upstream 252610 13615731 ~ 13624294 (+)
XLOC_027199 pphln1 coding downstream 11367 13901458 ~ 13963440 (+)
XLOC_027200 CU469420.1 coding downstream 216420 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 coding downstream 226275 14116366 ~ 14119559 (+)
XLOC_027202 NA coding downstream 259969 14150060 ~ 14158028 (+)
XLOC_027203 NA coding downstream 272252 14162343 ~ 14167862 (+)
XLOC_027191 NA non-coding upstream 290721 13584054 ~ 13586183 (+)
XLOC_027189 NA non-coding upstream 383548 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 407007 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 602269 13270792 ~ 13274635 (+)
XLOC_027183 NA non-coding upstream 679039 13178158 ~ 13197865 (+)
XLOC_027204 CR786571.4 non-coding downstream 284276 14174367 ~ 14176401 (+)

Expression


Co-expression Network