XLOC_027199 (pphln1)


Basic Information

Item Value
gene id XLOC_027199
gene name pphln1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13901458 ~ 13963440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053595
TGTGTGATAGAGGCGTGATCTCGCAGCTCGTGGTGTTTGTTGTGTTGCATTCACTGCTCGACATCTCAACAACACACTCCTTCACAACCAATCAGGCCAGATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACCGGGGGGAAGAACGGGAAAACGTGAGACGAAAGGCTCCTTTTCCTCCTGTGCGTGAACG
>TCONS_00053597
TGTGGCTGAAGCAAACTGCTGTGTGACTTGCTGGGATACCAGCTGGGAAACAGGACGAGGTTTCCTGTagatttcaagaaaaaaaaaaacaagATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACCGGGGGGAAGAACGGGAAAACGTGAGACGAAAGGCTCCTTTTCCTCCTGTGCGTGAACGATCTCCTGCCCGAAGGGACATCCCACCTTCACCTCACAGTCGGTCGGGGTCTAGCATAAGCAGCCGCAGCTACTCTCCAGAGCGGAGCAAAGCGCATCCCTTCCCACCACAGCAGGGCAAAAACAAGGAAAGGCCCCCCGGCCCCTCCGTGAGTGCATCACGAGATGGTTCGCCCCATAGCTCCGTATCTGCCACTAAGGAGGACATAACATCAGTGGAAGTGCCCACAGAGGAAGTCCCAGCCCCTGTGGATGAAGCTTCCTCTGTCATGGACGACTTTCAAGAGAGACGAGCTCAAGCTATTGCTGCCAAGGCTCGCGAAATTGAAAAGGTCTATCGTCAGGACTGCGAGACGTTTGGCATGGTGGTGAAGATGCTGGTTTCTAAGGAACCTAGCTTAGAGAAGCACCTGCAAAACCCACTGAAAGAGAACCTGATCGAGATCCGTGAGCGATGTCTTGAGGACTTGCAACACTTCATTGCTGAACTCGACGAGGTGGTACGACAGCCCGAACCTGCTGTCTAA
>TCONS_00053596
TGTGGCTGAAGCAAACTGCTGTGTGACTTGCTGGGATACCAGCTGGGAAACAGGACGAGGTTTCCTGTagatttcaagaaaaaaaaaaacaagATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACCGGGGGGAAGAACGGGAAAACGTGAGACGAAAGGCTCCTTTTCCTCCTGTGCGTGAACGATCTCCTGCCCGAAGGGACATCCCACCTTCACCTCACAGTCGGTCGGGGTCTAGCATAAGCAGCCGCAGCTACTCTCCAGAGCGGAGCAAAGCGCATCCCTTCCCACCACAGCAGGGCAAAAGATACGAGGAGCCATTTGGGCCAGGCAGAGCACCTGACAAGGAAAGGCCCCCCGGCCCCTCCGTGAGTGCATCACGAGATGGTTCGCCCCATAGCTCCGTATCTGCCACTAAGGAGGACATAACATCAGTGGAAGTGCCCACAGAGGAAGTCCCAGCCCCTGTGGATGAAGCTTCCTCTGTCATGGACGACTTTCAAGAGAGACGAGCTCAAGCTATTGCTGCCAAGGCTCGCGAAATTGAAAAGGTCTATCGTCAGGACTGCGAGACGTTTGGCATGGTGGTGAAGATGCTGGTTTCTAAGGAACCTAGCTTAGAGAAGCACCTGCAAAACCCACTGAAAGAGAACCTGATCGAGATCCGTGAGCGATGTCTTGAGGACTTGCAACACTTCATTGCTGAACTCGACGAGGTGGTACGACAGCCCGAACCTGCTGTCTAA
>TCONS_00053598
CTTACATGTATATCATTTACAAACACTCTTTAAAAGATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACCGGGGGGAAGAACGGGAAAACGTGAGACGAAAGGCTCCTTTTCCTCCTGTGCGTGAACGATCTCCTGCCCGAAGGGACATCCCACCTTCACCTCACAGTCGGTCGGGGTCTAGCATAAGCAGCCGCAGCTACTCTCCAGAGCGGAGCAAAGCGCATCCCTTCCCACCACAGCAGGGCAAAAGATACGAGGAGCCATTTGGGCCAGGCAGAGCACCTG
>TCONS_00053599
TGGAAGTGGAGTTTTGTTTGGCAGCGCGCTCAACCTTTCTCCACGTTTGCTCCTAAATGTGTTTTTCCCTCACGATAATTAAGTATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACC
>TCONS_00053600
TGTTTGGCAGCGCGCTCAACCTTTCTCCACGTTTGCTCCTAAATGTGTTTTTCCCTCACGATAATTAAGTGTATGCAACCGATTTAAGTATGCTAGATTGATAGGGATACGTCGAGCAAAGCGTATAAGCGATCAACACAGCTGAAGACAGAGATTAATAATTCAGAAACTAAAATGGCTTTTAGGAGAGAACGAAATTTAAGAGAGGTTTATGAAGACAGATTTGCCCCAGATAGAGCGgGTCCATATCCGAGAGGAGGACAAGGTGAGAGAAGACCTCCATTCGGGCGGCCTGATGAGGAATTCGGCCGTGGTTTTGAATATGATAATTCCCGCTTTTACCCAAACGGTGCTCCTCGCAACTACCATGGAGAGGATCAGAGAGGCTACCATGGAGACGGCCATCACAACTTTCCAAATGAACACAGGGGTGGACCTCCTGGACGAAGACAAGAAGACTTTCCATACTACAGAGGGCCAAGAGAAGAACCCCATGGTGGCCGCCAAATGGATTTTAGACCCAGTAATCGACCTGGTCCCCCACCGAATGCTCGAGTCCAGGGTTCTTACCCCGGGCCTAGGTCTATGCCTGGCCCTGATGCAGGAGACGACACACTGATACAGGCCATCATGAACCTGGACCGGGGGGAAGAACGGGAAAACGTGAGACGAAAGGCTCCTTTTCCTCCTGTGCGTGAACGATCTCCTGCCCGAAGGGACATCCCACCTTCACCTCACAGTCGGTCGGGGTCTAGCATAAGCAGCCGCAGCTACTCTCCAGAGCGGAGCAAAGCGCATCCCTTCCCACCACAGCAGGGCAAAAGATACGAGGAGCCATTTGGGCCAGGCAGAGCACCTGACAAGGAAAGGCCCCCCGGCCCCTCCGTGAGTGCATCACGAGATGGTTCGCCCCATAGCTCCGTATCTGCCACTAAGGAGGACATAACATCAGTGGAAGTGCCCACAGAGGAAGTCCCAGCCCCTGTGGATGAAGCTTCCTCTGTCATGGACGACTTTCAAGAGAGACGAGCTCAAGCTATTGCTGCCAAGGCTCGCGAAATTGAAAAGGTCTATCGTCAGGACTGCGAGACGTTTGGCATGGTGGTGAAGATGCTGGTTTCTAAGGAACCTAGCTTAGAGAAGCACCTGCAAAACCCACTGAAAGAGAACCTGATCGAGATCCGTGAGCGATGTCTTGAGGACTTGCAACACTTCATTGCTGAACTCGACGAGGTGGTACGACAGCCCGAACCTGCTGTCTAAGGTGGCCTCGTTTttcctgaagtttttttttttctaaacctgTACtcctttattgtttttataaaggaTCTCATTTATGTGAAAGGATGTCATTTATGTGAAAGCCATTGTACACTGTACATTGTGTCCACACTTCCTGGTACACAACAAACGAAAACATCTTGAAATATTGCCTTCATGCAATCCCGTTCATCCACTGAGGCTAGTTGTTAGGTTGTATAAACTCTTTGTAACCTTTTGAGCAGTAGGATAAAGTAAAGAAATGAGATGGTAAGCATAAAGTAATGACACAGGAGGGTCTCTCGTTCATTACGGAAGCTAAAGAGGTTTATTAACCTGTTGGGGAAATTTATTGAATGATGACTGTCGTCATGATCAAGTATGGTTAAATCGAAAGGGTTCTATGATGTTGCCAATGAAGACACTTAAAGTCCGACCAATGACAATTTGATGAATTATGAAACCTGATCTTTATGGGTTCAGCTATTTGCTGCTATTTGTAGTAATGTTAAGTTGTGCAACTGACAGtagaacacattttttttattattaaactttcCAATTAACATATTATGAAAACCCAACACAAGTGTTTATgtagtttttttctttgtatagTATTAAAGAGTCTGAACCTACTACAGTACATGTTTTCCTTTTGATTTGATGAGCCCGTTTTGTGGTTTCatgtttgtaattaaataaaattgctgTTTGCTATTACA
>TCONS_00053601
AACATTTAgcgtagcttagcatagatcattgaatcggattagaccattagcaaatAGCTCAAAATGGCCAGAGTTTTgattaattcagcaatttaatGTTTTACTCTTCTGTGGCTACATCATGTATCAAGGCCGATGGatctatactctcattctggcgtaataatcaaggaactttgctgccgtaccatggctgcagcagtcACAATCATAGTTTGTGGATTTTAACTGGTGGAGGGTTTTGTgatggggactattttcagGAGGACATAACATCAGTGGAAGTGCCCACAGAGGAAGTCCCAGCCCCTGTGGATGAAGCTTCCTCTGTCATGGACGACTTTCAAGAGAGACGAGCTCAAGCTATTGCTGCCAAGGCTCGCGAAATTGAAAAGGTCTATCGTCAGGACTGCGAGACGTTTGGCATGGTGGTGAAGATGCTGGTTTCTAAGGAACCTAGCTTAGAGAAGCACCTGCAAAACCCACTGAAAGAGAACCTGATCGAGATCCGTGAGCGATGTCTTGAGGACTTGCAACACTTCATTGCTGAACTCGACGAGGTGGTACGACAGCCCGAACCTGCTGTCTAAGGTGGCCTCGTTTttcctgaagtttttttttttctaaacctgTACtcctttattgtttttataaaggaTCTCATTTATGTGAAAGGATGTCATTTATGTGAAAGCCATTGTACACTGTACATTGTGTCCACACTTCCTGGTACACAACAAACGAAAACATCTTGAAATATTGCCTTCATGCAATCCCGTTCATCCACTGAGGCTAGTTGTTAGGTTG

Function

symbol description
pphln1 Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleoplasm. Orthologous to human PPHLN1 (periphilin 1).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-1873 Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleoplasm. Orthologous to human PPHLN1 (periphilin 1).

Ensembl:

ensembl_id ENSDARG00000045692

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053595 False 670 mRNA 0.51 7 13901458 13944143
TCONS_00053597 False 1189 mRNA 0.52 10 13909398 13962715
TCONS_00053596 False 1225 mRNA 0.52 11 13909398 13962715
TCONS_00053598 False 764 mRNA 0.52 8 13931578 13947386
TCONS_00053599 False 596 mRNA 0.49 6 13931733 13944002
TCONS_00053600 False 1988 mRNA 0.45 11 13931747 13963440
TCONS_00053601 True 807 mRNA 0.44 3 13953537 13962932

Neighbor

gene id symbol gene type direction distance location
XLOC_027198 NA coding upstream 11367 13876904 ~ 13890091 (+)
XLOC_027197 pdzrn4 coding upstream 40013 13810811 ~ 13861445 (+)
XLOC_027196 cntn1b coding upstream 144742 13733838 ~ 13756716 (+)
XLOC_027195 nrcama coding upstream 173083 13696537 ~ 13728375 (+)
XLOC_027194 pnpla8 coding upstream 257842 13625892 ~ 13643616 (+)
XLOC_027200 CU469420.1 coding downstream 143071 14106511 ~ 14108810 (+)
XLOC_027201 CU469420.2 coding downstream 152926 14116366 ~ 14119559 (+)
XLOC_027202 NA coding downstream 186620 14150060 ~ 14158028 (+)
XLOC_027203 NA coding downstream 198903 14162343 ~ 14167862 (+)
XLOC_027204 CR786571.4 coding downstream 210927 14174367 ~ 14176401 (+)
XLOC_027191 NA non-coding upstream 315275 13584054 ~ 13586183 (+)
XLOC_027189 NA non-coding upstream 408102 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 431561 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 626823 13270792 ~ 13274635 (+)

Expression


Co-expression Network