G819787


Basic Information

Item Value
gene id G819787
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54518078 ~ 54522813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU932264
AGGAAAGAGCAGAATATTTACACAAGCGTGAAACAGCCAACCTGTCACAGTTGCTTCAAGTCTCAAACTCTTAAAAAGGTATCAGAATTCATAAAGTATTAAAACTCTTTAGTTTCTATTTTTTTCTTAAATTTGTGTCTACATATTTTAATGTATGCTCCTAAGCCTTTTTAAATGTACTTTGAAAAAAGGAACTGCTTTCCAATACGCCATAATTAAAACAAACCAAAAGAGGGAATCAGGAGGACAAGGATAGAAGTTGTTCACTGGTGTGGCGGCAGAGTGGGGAACCTGTGACAGTGTTTTGAGTGGGCATGGTAAGGTGGTGGATTGTGGGTAATGGAGGGGTCGTAGAGGGTtgtgggaaggggagggggagctGACAAGGCACTATGTGCAAAGTGAAAGCTCTGTGTTCATCAAACAGCATCTGGATCTCTCCCTCtggctttcctctccatcttccACCCAACTCACTACGGCAGGGAGACGAGACAAAATAAGTACGGTTTTCTTCAAAGGAGTTCTGTAGCGAAGCCTCTTTCTTGTCATCTTCACACAACAAGTAGcatagtaaaataaaataacataaaataaaaagAAAACATGAGACCAACTGCCCCAGTACATACAATATAACTGTTGATATACTCCATAGAGTAAGTTTACTACACGTATCCATAATCCCCCCCAAGAtcctaatcatcatcatcatcagaaacCTCTCACTTAAATAACAGAAGAGCCAAACGACATCAAAGCAGGAGAACCATCCTGAGACTTTAAAATGCAACCAGCTGTTTTACAATCACAGTCATCAAAGCCTAGTGTGTGTGGCGGGAGGGAGGCAGCACACAGCAACATTTTCCATCCACTAAACAAATGTGCTCAATCAGGGAATAAAAGATGCTTAACAGAAGAACATAGTAGCAGTTTAAAAATATCTCAAACCATCCCAAATAGGGTGAATGAACAGAAAAGTGGTCAAGTCAATGCCGATCCTCCACTACCTTCTCTGGTTTGGAAAAAAACAGTAACCAGCATATAACTCTGTTTAAGTTAAGAATTTCATAAACTAGTCTGTATGCCCTGCTCTCCGATATcaagtacagtacatacagcgaTTCCAGCCCTATGTGTTTGGtcgggtggggagggagggattggcTGTAGGGTGCGGTATTGAACTTCATTGAGTTGCCAACACTAGGACAGGCCTGAGCTGGCCTGAgctggaaaggaaaggagaggttGTCCGTATTGGAGGATGAccaagagaggaggaagatgagagtAACAGCCCTGCAGGACACTGAGGTGAAACATGAATACTAAATATCCATATATTTTCAGAAAATGTAAATGTCTAATCAAATATAGGATGTGTTAAGAAGTCCTACTCCTAACTGATTAGGAGGAATTTGAATATCACattaaacaaaacattttaagtAAATACATTTAGGAGAGACTTTTCATTTTCATTAAATCCCACCACATTGGTTGAATCCTGATCTCGGATAGATGGATGGGATGGAAGGTTACATATCACATCTGTAGTCTGTGTGATCCACACGGCTCTCACTGGAGAACTGACCTAAATATTTCAGAAGTTTCTCAGAAATGTATCTGTGTCTTTCTTCTAGCCAGCCATACTGTATCTCTACTCTCAGAGGACAAGGGAAAGGAATGAAGCTTCTTGTTTTTGTACATGACCGAAAGGGAATCGGTGTAACATGTTAAAGGGAGACGATGCATTTCACAAAAGTATCAGATTTCTGAGGAAACAAAAAACCTTCGCCCAGTTAAAAACACTCACAAAGACTGAGCTACATCTCATCATCTTGTCACACATCACAGGTGTTTGcatttcaacatatttttcaCTGTTTTTTTTTCCATCTTCACAGCAGACTGAAAAACAAAGGAAAGACAACACTGAATGTGCACCTTCCTTGGCGCTTTAAAAGTCCTCTTTTTCCGGTCGGATGACGCTCGTCACAGATGCTGTTACGGAACGTAAGGGAAACCCTGGGAGATCTACTCTGCTAGCACTAACCATTGTTTGGTTGCTGCAGAGTacaaacacacaaactcatacaacTTTCACCACTTCAACAGATCAACAATAACAAAGAAACCATCTATTTAATTACACTAAAATAGAACTGTTGAATGTTGAAGTCACTAGAGTGACAGTACTTGCTCTCATGTGGGGTTCAAATCATGAGGGATTACCCTTCGCTCGCTCAAAGCTTTACCTATGAACTTCTCTCATCTTTGTCTGCAAACCTCTTCCTCAGTGTCTACCATGACAGTCTGTAAGACTGTAACTCTAACACAGTGATCTACAGTATCTGAGGAACCTGAGGAGAGATAGCAGGTGGAACTTCATGAAGCCTTTAAAAGGGTAGTGGGTGAATTAAACCTTTGCTACATTTAGCGTGGTGCTAAAGTCCAATGAATCCTTCTGTGGTGTCTGACTTCTGTTGTACAGCAAAGCCCACAACATCACTGTACTGTAAGCCATGATATTTGCCTTCCAAAAAACCTTGAGGTCCCAGAACTAAAGTTATCTACTTCACTGTGGTCTGGAGCCTGTGCACAGAGGTGTGCATGGTCATGGGAGCAACCAAGAGGGCTGCTCATCCAGGTGGCtaacacagaaggctgttttcATTCCCCAGAGTGGTATACAAAACCGAGCCTTTGGTCTTTCTAAAAGCCACAATAGCACTGTGGTTGTGTTAAATACCGGAACACCAAACAGCTACGGTATTTCCAGGACTATTAAAACATATGTTCTCCCAAGACAGGAAAGGCCCCAAAACTTTACGATTTGTTGATTTTCTtctatttttttttgtcatttaactttttttttttactgttcagTCACGAGGCATGACAACATTTTAATCATAGCACATTTGATCTAAAGAAAACGTCTTTGCACTAAACAACATTGAAATAAAACATGGCACAGGACAAGGTTTCCTCTTGTTTTCATAGTTCACTCTTTGAAATAACAAATCCTTTTCTTTCAAAGTATTCTGTACATTAAAATGGAAAACTTTGACTATTTTCATTTGTTTCTTTAAAAATGAAGTTgtatttatatatctatatatatttatatatcctCTTCTTTTGATTTAGCTTTTTTGTAAATTGTGCAAATTCAGCAGTAACACAAGTGGCACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTGGGTAGTTGATAAAAACACACCACTGGAGAGAGTGGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTGGGTAGTTGATAAAAACACACCACTGGAGAGAGTGGGTAGTTGATAAAAACACACCACTGGAGAGAGTGGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACACCACTGGAGAGAGTAGGTAGTTGATAAAAACACAAAATCTAAAGctaaatcacacaacaacaaaaaaaaggatCTGAAAATCAAAATGAAGTCCATGAAAGTAGATGAAGTCGCTGGCACGTCAGAAGCTTCCATTGAGAGGGGAGCTATATACATGAAGTCCTTTCTCCATAGCCCCCCCCCacaggagatatatatatatatatctcctggCCTCTTTAGCCAGCTGCTTCACAGTCCCAGCTGTGGGTAGATGGATCAACACGGAAGAAAAACTGAAACCAGTGATGAAGACCGTTATGATAAGACACTTTCTCGGGGCGACAGACGTTACGTGTTTATAAATGAAGGGTTGTTTGGATGGGCCGGAGCCCAGGCCTAACTCTGGTGTGTCTCCAGTGTACTGCTTGTGTCCTTGCAGTCCTAATGCGTTGTGTTGGGGGTCAGGGGCTGGCGTCAGTGAGAGAAGGCCTTGCTGCAACCCTCTCCGCCCCTCAGTGGCGGGCCGTTCCTCAGCTGGCCAGGGCCATGGTGTCGATGACCTGCTCCAGCTTACTGCGCAGTCTCTGCCTGCGAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU932264 True 4158 lncRNA 0.41 2 54518078 54522813
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532395 LOC106571990 coding upstream 211905 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 270163 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 278572 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 284631 54231749 ~ 54233447 (+)
LOC110532391 LOC106571996 coding upstream 844580 53596083 ~ 53676213 (+)
twist3 LOC106572367 coding downstream 403915 54926728 ~ 54934570 (+)
LOC110532404 LOC106572363 coding downstream 669540 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 694793 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 805299 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 852362 55375175 ~ 55410299 (+)
G819740 NA non-coding upstream 59890 54454852 ~ 54458188 (+)
G819734 NA non-coding upstream 71078 54446764 ~ 54447000 (+)
G819732 NA non-coding upstream 72866 54444992 ~ 54445212 (+)
G819712 NA non-coding upstream 89755 54428081 ~ 54428323 (+)
G819707 NA non-coding upstream 94836 54422956 ~ 54423242 (+)
G819808 NA non-coding downstream 36645 54559458 ~ 54559662 (+)
G819811 NA non-coding downstream 44003 54566816 ~ 54567043 (+)
G819812 NA non-coding downstream 44928 54567741 ~ 54567967 (+)
G819815 NA non-coding downstream 49030 54571843 ~ 54572082 (+)
G819816 NA non-coding downstream 55776 54578589 ~ 54578825 (+)
LOC110532368 LOC106572016 other upstream 1790558 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2192438 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3171584 51345372 ~ 51346494 (+)
G815610 NA other upstream 3439136 51078447 ~ 51078942 (+)
G815428 NA other upstream 3717697 50796214 ~ 50800381 (+)
G819897 NA other downstream 204058 54726871 ~ 54727376 (+)
G820665 NA other downstream 710445 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 1008224 55531033 ~ 55647541 (+)
G820944 NA other downstream 1174827 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1451229 55974042 ~ 55975316 (+)

Expression

G819787 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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G819787 Expression in each Bioproject

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G819787 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network