XLOC_002720


Basic Information

Item Value
gene id XLOC_002720
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20616776 ~ 20618813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006034
ACCCCTTCAAACCCAGGAGACATCGGAGGACTGGTGGGAGAAAGAGGTGGTATCATGTCCTCATTAGATTCTTTATGTGTGGATCCATTCGATTCATGTGGTAGAACTGAGTCTGAATCATTCAAGCCATTTGCAAGCTTCTCTTTGTTTTTGTCATCCTGAACTACAAACATTACCTGCTTTTTCAGCTTTGATTCAGAAACAACTGTTGTATCCTCAACAGCATCCTTTGAGTCCTCTTCTGTACTGTCAGGTGTTGTATTAGAGATTTCTGGAAACTCTTCTTCAGGTTCTTTTGAATCTGTCGCATCTTGAGCAACTCCTTCATTACTCGTTTCCTTTTCTAAATTATCCTCTTCCTTGTTTGACATCTCTGGAGTCTGTGAATCAGTAATATTTGTTGTCTCATTTTGGATTGGCGTTTCCATCTCTTCATCTGATTTTCTGGAGATCTCACTGTTTTCGTTTATTGAGTCTACATCTTCATGATCGTCCTTCATGGTGTCTTCTTCCTTGCTTGTCGAACATTCCTCCTCTGTTGTTTCCTTGTCTTTTTCACTGCTTTCTTCTTCCTCAGACTTTTCATTGTTTGAGTTGACATCTTCATGCCTCACTCCTTCACTGATGACTTCAGTAAAGTCCTCGCTCTCTACCTTCATGGCAATGTGATCTTCTTTGGTGATTGTTTGATCTTCTGTCTCTAGCAGTCTTGATTCTTCCTCTGTTCCTCCATCTGTCTCCAGTTCTTCAACTGTTTCTTCTGTTTCCAAAGGTTCAGTTGATGGTTGTTCATTCTTAAAGTCAGGAGCTCTTTCAGGAAAAATACTCGAAGGCACCTTAGGAGTTTTAGTATTATCTAATGTGAAAGTAGACGTTTTCAAAGGACAGGCCAGATTAAGGTAGTCATTGGGATTTTCCTCATTCCTGTTAGTTTTTAAAGCTAGTGTTGTTTCCAAACACAAAGCTACAACCTGTGTGCTATGTTGATGTGTTGCATCTTTGTCAAGAACAGCAGGTATTTGAAGGGATTTCCAAAATGTTTGGTCATTGTCAGAATTTGTCACAGTGCCATTTCTTTTCTCAGCAGCTTCCGTGTCCTCTTTGGTAAGACCTAATGTGTCACTTTCAGAAGAAACTGTTGTTTGTGCTGGTGCACTGGAGAGATTTAAGTTCTTGTCAGTTTCTTCTGTATCAACCTCATCTTTGATGTCAGCAACTTTGTTACTTGGAGCATCGACTACGTCAGGTGTTTCCTCTTTTGGTTTGGCAGTGTTTTCACTTTCAGTACCATCTGAAGGGCATGTTCCCACAGTTTCAGCTGCACTTGAATCTTCTGAGTTTTTAGTTACCTGAACTGGTGAATTGTCACCCCAGAATCCAGATTTGCAGCGACGGGAGCCGCCAGACAGAAACGAAAGGAGATTTCCTGGAACAGAGAGGCGTCTTGCCCTCTTTTGAGTTTTGACCTGATTAGTGGCCTGTGAAGCCCTGCGGGTCACTTTGACCTCAGGATTTAGCTCTGAGTTGATGGGGGATTGAGGAACAGTGTCCAGAACCGAGGTCTTCTTTGGGGTCTCAGGTTCTTGTGGTCCCTGTTCTTCTATTGCTTGTTCTGGTCGTGGCAGTGTTTTCTCGGATTCTGTGGTGATTGTGTCTTCCACGGAGGATTGGATATTGAACAAAGACTcattttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006034 True 1696 lncRNA 0.42 2 20616776 20618813

Neighbor

gene id symbol gene type direction distance location
XLOC_002719 nsd3 coding downstream 27887 20543279 ~ 20588889 (-)
XLOC_002718 plpp5 coding downstream 79714 20527427 ~ 20537062 (-)
XLOC_002717 ddhd2 coding downstream 92184 20503886 ~ 20524592 (-)
XLOC_002716 BX294119.1 coding downstream 132846 20483814 ~ 20483930 (-)
XLOC_002715 tacc1 coding downstream 135013 20460551 ~ 20481763 (-)
XLOC_002721 sprn2 coding upstream 17147 20635960 ~ 20637098 (-)
XLOC_002722 rassf2b coding upstream 22188 20641001 ~ 20650302 (-)
XLOC_002723 kcnip3b coding upstream 34903 20653716 ~ 20706270 (-)
XLOC_002724 NA coding upstream 224105 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 coding upstream 289629 20908442 ~ 20908556 (-)
XLOC_002714 NA non-coding downstream 160769 20448639 ~ 20456007 (-)
XLOC_002710 NA non-coding downstream 379805 20234014 ~ 20236971 (-)
XLOC_002708 CR450836.1 non-coding downstream 465448 20143797 ~ 20151328 (-)
XLOC_002705 NA non-coding downstream 620045 19931298 ~ 19996731 (-)
XLOC_002730 BX957322.2 non-coding upstream 951383 21570196 ~ 21573457 (-)
XLOC_002731 NA non-coding upstream 1008994 21627807 ~ 21649728 (-)
XLOC_002732 NA non-coding upstream 1027341 21646154 ~ 21843863 (-)

Expression


Co-expression Network