XLOC_027200 (CU469420.1)


Basic Information

Item Value
gene id XLOC_027200
gene name CU469420.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14106511 ~ 14108810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053602
ATGTAGAGAAACACTCTCTCCTGCTTTATATCAGACCTTGGCTTCAATTGGAGCCATAAAAAACTCACCTCAAGACTTTGTTGTTATTGAGATAGACACCAATGGACAACTTGTTAACAGTGTAAAtactgaagaagaagaagaagaagaaagaaagaccTTGTCAAGCTGTTACAGGGATTGATAAATTAACACCATATAAACCAAATGACACTGACAGTTTAATTCAGGATTGCTTTAATCTGAATGTAATCCTGGGTCCAAATGTGAACAGGGAATTGTAGCATTTTACTAATAAACTGAAAGTGAAACCCTGTTCAGATGATAATGAAAAGGTGCCGTTCAGATCTTTTGCTGATAAACACATGAGAGTTTGGTTCAACTTCCCCTTCCTCCAGACTCCAACTAGACTGAGATCCAGGTCAGAGAAGATCCAGACTTCCAGGAGCTTGCCAGTTTGGCCTTATGAGATGCTGAGGACTTTTTCAGGTTTATTGATGCCAAAACACCTGGTTCTGTGTTCACCTTCCTGCCCGATGACTACAAGGAGCACTGGACATTGGTTCATCATTTTGTTAGCAGGCGTTTCGGGAAGCTTGTGGAAACCAAGAGCTTTGTGGACCAGCAGAAGACTTGCATTATGGTTGCTGGAGAAAGGCTTAGAGTTTGAGAGGAGAGGAATGCAGATCTCTTGTGTCCGTCCTGCGTTTGAAGCTCTTAAGCTTGGAAGACTGCAGGGAAATCACTTTGAACTGGTCATCTGAAGCATCATGGGAAACATGGTCTTGCAGAGCTGCCACAGGTTATGGAGGAAGCAGTGGAAAATGTGAagaACAAAGGCTTTGTGAATTATTATAGTCCTCAGCAGTTTGGAAGTGGATCCTGTGTCCAAGCAGATCAAGTAGGCCAAAtaaaaactctaaaaactggGCCTTAAGGATGTTCAGGGCGATCTGGTTTGGGCTGAGTCTGTAAAAGGGCTCAAAGATGCCACAGGAGCTCAGTGCTCCACAGATCCATGTTGTGACTTCAGATGAGGAGAAGAATGAGGTCCTCTCATCCCAGGAAGTTATCGACCCCTGCTTGCTAAGCCACAGAACATCACATATAGCCTGCAGACGGGTCTATCACACACACGTGTCTGTCACTGCACTTTGACCTGGAGGCGTCCTGCTACGCTACTGTGTACTCAGTGGCACTAATTTAAAAGTGGTTAGAGACTAAAAACGTCAAATATGAGGAGCcgtatttttattaaaaagtt
>TCONS_00057136
AGAGAAACACTCTCTCCTGCTTTATATCAGACCTTGGCTTCAATTGGAGCCATAAAAAACTCACCTCAAGACTTTGTTGTTATTGAGATAGACACCAATGGACAACTTGTTAACAGTGTAAAtaGTCAAGCTGTTACAGGGATTGATAAATTAACACCATATAAACCAAATGACACTGACAGTTTAATTCAGGATTGCTTTAATCTGAATGTAATCCTGGATGATAATGAAAAGGTGCCGTTCAGATCTTTTGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000086259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053602 False 1264 unprocessed_pseudogene 0.43 4 14106511 14108810
TCONS_00057136 True 255 lncRNA 0.36 3 14106515 14106866

Neighbor

gene id symbol gene type direction distance location
XLOC_027199 pphln1 coding upstream 143071 13901458 ~ 13963440 (+)
XLOC_027198 NA coding upstream 216420 13876904 ~ 13890091 (+)
XLOC_027197 pdzrn4 coding upstream 245066 13810811 ~ 13861445 (+)
XLOC_027196 cntn1b coding upstream 349795 13733838 ~ 13756716 (+)
XLOC_027195 nrcama coding upstream 378136 13696537 ~ 13728375 (+)
XLOC_027201 CU469420.2 coding downstream 7556 14116366 ~ 14119559 (+)
XLOC_027202 NA coding downstream 41250 14150060 ~ 14158028 (+)
XLOC_027203 NA coding downstream 53533 14162343 ~ 14167862 (+)
XLOC_027204 CR786571.4 coding downstream 65557 14174367 ~ 14176401 (+)
XLOC_027205 NA coding downstream 76356 14185166 ~ 14188729 (+)
XLOC_027191 NA non-coding upstream 520328 13584054 ~ 13586183 (+)
XLOC_027189 NA non-coding upstream 613155 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 636614 13468591 ~ 13469897 (+)
XLOC_027184 BX470116.1 non-coding upstream 831876 13270792 ~ 13274635 (+)

Expression


Co-expression Network