XLOC_027201 (CU469420.2)


Basic Information

Item Value
gene id XLOC_027201
gene name CU469420.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14116366 ~ 14119559 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053603
GTTTTGCAGCTAAACTCAGGAGAGCGGCTCAGCAGGATCAGGGAACTGGAGCATTTTACTAATAAACTGAAGGTGAAACCCTGTTCAGATGATCAAGAAAAGGTTGAACTGTTGTTGGGAACTTTTCCTGATAAACACATGAGAGCTGTGGTCCACAGAGCGGTTCGGTTCAACTTCCCCTTCCTCCAGACTCTGACCAATCAATCTGAGATCCGGGTCAGAGAAGATCCAGACTTCCAGGAGCTCGCCGGTTTGGCTTCTGAAGGAGAAGCTGAGGACTTTTTCAGGTTTATTGATGCCAAAACACCTGGTTCTGTGTTCACGTTCCTGCCCAATGACAGCAAGGAGCACCGGACATCAGTTCATCATTTAGTTAGCAGGCGTTTCGGGAAGCTTGTGGAAACCAGGAGCTTTGTGGACCAGCAGAAGACTTGCATTACGGTGAGACTGAGGGAGAGAGGCAAACAAGCCAAGAAGAGAACGATGGCGGACTGTCAAATGCAGGAGGAGAGTTTATACACGGCTTTTACTCTGCGGAAGGAGAACCTGGAGACTCTGGAGGCCATCAGCTACATGGCTGCAGTACTCGGAGTGCTTCCCTCTGATTTCACTTATGCAGGAATTAAAGACAAGAGAGCCATTACTTACCAGGCCATGGTGGTGAAAAAGATCTCTCCAGAGCGGTTGCTGGAGAAAGGCTCAGAGTTTGAGAGGAGGGGAATGCAGATCTCTTGTGTCCGTCCTGCGTTTGAAGCTCTTAAGATTGGGAGACTGCAGGGAAATCACTTTGAGCTGGTCATCAGAGACCTGAAGCATCATGGGAAACATGGTCTTGCAGAGCTGCCACAGCTTATAGAGGAAGCAGTGGAAAATGTGAagAACAAAGGCTTTGTGAATTATTACGGTCCTCAGCGGTTTGGAAGTGGTTCGTGTGTCCAGATCAAGTAGGGCTTGCGCTGTTGAAGGAGAATATGGAGGCTTCAGTTAAGCTGTTCTTCACCCCAGAGGATGACGATGACCTCCAGAACAAAGCTAAACGTCATTTTCTGCACACAGGGAATGCCAAGGAGAGCTTGGCGCTGATGCCAGCGTATAAAGCCAGAGAGCGGCTCATGCTGCGGGCGCTCCAACGGTACGGCAGTGGACAGGAGGGTTGCACTCGTGGCTGGCTCAGTTTACCCCACAGCATGAGGGTCTTCTACCTTCACTCCTACTGCAGCAGAGTGTGGAACCAAGCAGCCAAATACAGGCTGCAAAAACTGGGCTTTAAGCCTGTTCAGGGCGATCTGGTTTGGGCTGAGCATGTAAAAGGGCTCAAAGATGCCACAGTGGAGCTCAGTGCTCCACAGGTGATTCTTCCTATGCCAGGAAATAGTGTCAAGTATCCAGAAAACCTTTTGGGTCAATGGTATCAAGACTGATTGGCTCAAGACGGTTTGGAGTCCTGCCGATTCAGAGTGACTCCCCTTAAACTCAACGTCCCTGGATGTTATCGACCCCTGCTCGCTAAGCCACAGAACATCACATATAGCCTGCAGACGAGTTCATCAGACGAGTCTAACACACACTGTCTGTCACTAAACTTTGACCTGGAGGCGTCCTGCTACGCTACTGTGTGTCTCGGAGAGATTATGAAGACTAATCT
>TCONS_00057670
ATGGAGGCTTCAGTTAAGCTGTTCTTCACCCCAGAGGATGACGATGACCTCCAGAACAAAGCTAAACGTCATTTTCTGCACACAGGGAATGCCAAGGAGAGCTTGGCGCTGATGCCAGCGTATAAAGCCAGAGAGCGGCTCATGCTGCGGGCGCTCCAACGGTACGGCAGTGGACAGGAGGGTTGCACTCGTGGCTGGCTCAGTTTACCCCACAGCATGAGGGTCTTCTACCTTCACTCCTACTGCAGCAGAGTGTGGAACCAAGCAGCCAAATACAGGCTGCAAAAACTGGGCTTTAAGCCTGTTCAGGGCGATCTGGTTTGGGCTGAGCATGTAAAAGGGCTCAAAGATGCCACAGTGGAGCTCAGTGCTCCACAGATCCATGTTGTGACTTCAGATGAGGAGAAGAATGAGGTTTTGTCATTAGATCAGGTGATTCTTCCTATGCCAGGAAATAGTGTCAAGTATCCAGAAAACCTTTTGGGTCAATGGTATCAAGACTGATTGGCTCAAGACGGTTTGGAGTCCTGCCGATTCAGAGTGACTCCCCTTAAACTCAACGTCCCTGGATGTTATCGACCCCTGCTCGCTAAGCCACAGAACATCACATATAGCCTGCAGACGAGTTCATCAGACGAGTCTAACACACACTGTCTGTCACTAAACTTTGACCTGGAGGCGTCCTGCTACGCTACTGTGTGTCTCGGAGAGATTATGAAGACTAATCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090957

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053603 False 1645 unprocessed_pseudogene 0.50 7 14116366 14119559
TCONS_00057670 True 728 lncRNA 0.50 5 14118043 14119559

Neighbor

gene id symbol gene type direction distance location
XLOC_027200 CU469420.1 coding upstream 7556 14106511 ~ 14108810 (+)
XLOC_027199 pphln1 coding upstream 152926 13901458 ~ 13963440 (+)
XLOC_027198 NA coding upstream 226275 13876904 ~ 13890091 (+)
XLOC_027197 pdzrn4 coding upstream 254921 13810811 ~ 13861445 (+)
XLOC_027196 cntn1b coding upstream 359650 13733838 ~ 13756716 (+)
XLOC_027202 NA coding downstream 30501 14150060 ~ 14158028 (+)
XLOC_027203 NA coding downstream 42784 14162343 ~ 14167862 (+)
XLOC_027204 CR786571.4 coding downstream 54808 14174367 ~ 14176401 (+)
XLOC_027205 NA coding downstream 65607 14185166 ~ 14188729 (+)
XLOC_027206 prl2 coding downstream 224147 14343706 ~ 14348811 (+)
XLOC_027191 NA non-coding upstream 530183 13584054 ~ 13586183 (+)
XLOC_027189 NA non-coding upstream 623010 13489682 ~ 13493356 (+)
XLOC_027188 NA non-coding upstream 646469 13468591 ~ 13469897 (+)
XLOC_027208 BX571705.1 non-coding downstream 279913 14399472 ~ 14408298 (+)

Expression


Co-expression Network