G819915 (LOC106572368)


Basic Information

Item Value
gene id G819915
gene name LOC106572368
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54760641 ~ 54761506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU932399
TGAGCAGCCAGGGAAGTGACAgtttcccctctcctctataGCAGGACTGGATGCGCTCCTTGATCTTCTCCTTGATGCGGCGCAGGGTGAACAGGCACAGGGCTGACTCCTTGGGGGGCTTGGCCCGGTTCTTCTGGCCCTGGGCAAACACCGTGAACAGCACCTCCTCCTGCTCTGAGATGCCCAGTGAGCGCGCCAGCTTGGTCCCGGGTCGGCTGAGGTAGGCGTCCTGCACCAGACGATACTCCACCCCGTCCTTGGTGCAGCCGATGGGGAACTCCACGTAGGAGTAGAACTTGGGGTCGTCCACGCAGAGACGGACGATCTTAGAGGTGAAGAACTGCTCCCCGCTGGCGTCGGGCGAGGTGAGCTGGGTATCCAGCTGCAGGGTCAGATAGTAGACAAACTGCTCGCTGCTGAAGCCGTAGATGTAGTAGATGTCGAAGGCGGGGAACTTGGAGAGCGTGTCCGAGGGGATCTTGAGCTGCGAGGAGACAAACTCATCCTGGTAGACGAAGCTGAACATGTCGGCATTCTCCTCGTTGTCCATCAGCTTGCGGCTGGAGAGCGTGGGGAAGTACTCCGACTTGCCGTCGATGGGCGTGCCCACAAACAGCTTGCCGGCCTCTCCTCCGCTTCCGGCCGCATCTCCACCAATGACCACCCCAGACATGGTGCCAGCCTCGGCCACGCTG
>TU932398
CCTCCTGCTCTGAGATGCCCAGTGAGCGCGCCAGCTTGGTCCCGGGTCGGCTGAGGTAGGCGTCCTGCACCAGACGATACTCCACCCCGTCCTTGGTGCAGCCGATGGGGAACTCCACGTAGGAGTAGAACTTGGGGTCGTCCACGCAGAGACGGACGATCTTAGAGGTGAAGAACTGCTCCCCGCTGGCGTCGGGCGAGGTGAGCTGGGTATCCAGCTGCAGGGTCAGATAGTAGACAAACTGCTCGCTGCTGAAGCCGTAGATGTAGTAGATGTCGAAGGCGGGGAACTTGGAGAGCGTGTCCGAGGGGATCTTGAGCTGCGAGGAGACAAACTCATCCTGGTAGACGAAGCTGAACATGTCGGCATTCTCCTCGTTGTCCATCAGCTTGCGGCTGGAGAGCGTGGGGAAGTACTCCGACTTGCCGTCGATGGGCGTGCCCACAAACAGCTTGCCGGCCTCTCCTCCGCTTCCGGCCGCATCTCCACCAATGACCACCCCAGACATGGTGCCAGCCTCGGCCACGCTGGACAGGTAGTGCTCCTTACGGTGGTGGGGCTCACCCAACTTGAACAGGTCGTCCAGCCTGAGGAACTGGCAGATTCCCTGGGAGGTGCTGCCGCAGGCGATCAGGCGGTTCTGACCGTAGTCCAGCAGCAGTAGCTTGTTGACGTTGCTGATCTGGGTCAGCTCGTGGGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU932399 False 695 lncRNA 0.61 1 54760641 54761335
TU932398 True 701 lncRNA 0.61 1 54760806 54761506

Neighbor

gene id symbol gene type direction distance location
LOC110532395 LOC106571990 coding upstream 454468 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 512726 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 521135 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 527194 54231749 ~ 54233447 (+)
LOC110532391 LOC106571996 coding upstream 1087143 53596083 ~ 53676213 (+)
twist3 LOC106572367 coding downstream 165222 54926728 ~ 54934570 (+)
LOC110532404 LOC106572363 coding downstream 430847 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 456100 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 566606 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 613669 55375175 ~ 55410299 (+)
G819914 NA non-coding upstream 797 54759619 ~ 54759844 (+)
G819913 NA non-coding upstream 1345 54759061 ~ 54759296 (+)
G819912 NA non-coding upstream 2455 54757935 ~ 54758186 (+)
G819909 NA non-coding upstream 4505 54755928 ~ 54756136 (+)
G819908 NA non-coding upstream 6227 54754088 ~ 54754414 (+)
G819929 NA non-coding downstream 21631 54783137 ~ 54834710 (+)
G819930 NA non-coding downstream 73713 54835219 ~ 54835464 (+)
G819970 NA non-coding downstream 78428 54839934 ~ 54840347 (+)
G820042 NA non-coding downstream 187559 54949065 ~ 54949742 (+)
G820110 NA non-coding downstream 289947 55051453 ~ 55051664 (+)
G819897 NA other upstream 33265 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2033121 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2435001 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3414147 51345372 ~ 51346494 (+)
G815610 NA other upstream 3681699 51078447 ~ 51078942 (+)
G820665 NA other downstream 471752 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 769531 55531033 ~ 55647541 (+)
G820944 NA other downstream 936134 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 1212536 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 1300200 56061706 ~ 56063655 (+)

Expression


Co-expression Network