G820174 (LOC106572364)


Basic Information

Item Value
gene id G820174
gene name LOC106572364
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55155407 ~ 55156727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU932673
TGTTACACAATTAAATAGGTTTATAAAGTAGTGTATTCAGTTAGGCATTTATTCTGACGTCAAAGTGGAATGTTTTTCATAAACTGCAGCATTTCAAATTCTCCCCACTACACACATATGTATGCATGTATAAATAGTTCAACTGCAGCTCAGTGAGTATACATGTATCCTTAGATTTTTGATATGGTGAAAAGCAACTCAATAAACAAGACTTGTAAAACCGTAAGAAAATAACACTTGGATAAAAAAAAGTGACTTTTGGGTGTTGTCAGACATAGGGCAACCCCACATCACTGAATCATAGGTTCTCCCATTAGAGTGtcaaagcacacagacacactattcCTCATTGTGTTGTATGCCTTATTCACTGTCAGTCATCTTCCTTGCCTCTGAGAACTCAACATTCAGCAGTCAGAACTATGCCAAGTAATTTCATGGTTCTAAAAAGGCAAGCGTATGCAACACAATTAAATAATAAGTTCCACATCATTAAAGTGACATCAAAAAGACAGATCCTAATTTTAACAATATAAAAGGAGTGTCAGAGTTTAATAAACTCATCAAATATAAGAGTGCTTATATACTGTACAAATGGTACAATAGGCCTACAGAAAATTATTATATCAGACACTAATTCCCAAGATTAAACATTACCAGAGATATCCATCTTCATTGGGTCCTTGTATCACTGGATTTGTTCCATAAGGCCAACATGAGCAACAGTGAGAAGCTACAGTGAAATGTATATACTTGTCTGCAAGGTTTCAACTGGACCCTGTAAACGGATCATTCATTATCaaatgtgtgtgtctttgtctgtgttgtgtgtttgtgcttgcatGTGTATCTTGTACACATTTGTGTGTATAttcttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcctctTTTTCTGCTCTGACCAATTGTCTGTGGCCACGCTGTGAGCTAAGTGAGCCTGTTTGTGACCAGCATAATGTGATGACACCTATGGGAAGGGACAATGCAATGCTCTCAGATGTCAGTGGTTTCCAGGATCCTTGGCGTGTCCATCTCCCTATTGGTGCAGCGCTTGCCGTTGCTCTGTCCATTGGCTCGGTAGTGCACACTGCCACCTGGCTTAGTGATGGTGTCCTCCTCAGAAGCCGTGAGCTCCAGGCTGACTGTAGCGCGACTCGTCTCGGTCACAGAGGAGTTGGTGTTGTAGTGGGAGTAGGAATCTGTCCATTTCCACACGAGTTTGGTCTGGGCCCATTTCCTTCTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU932673 True 1277 lncRNA 0.41 2 55155407 55156727

Neighbor

gene id symbol gene type direction distance location
twist3 LOC106572367 coding upstream 220837 54926728 ~ 54934570 (+)
LOC110532395 LOC106571990 coding upstream 849234 54295022 ~ 54306173 (+)
LOC110532396 LOC106571991 coding upstream 907492 54245323 ~ 54249584 (+)
LOC110532392 dffb coding upstream 915901 54234796 ~ 54239506 (+)
LOC118966073 NA coding upstream 921960 54231749 ~ 54233447 (+)
LOC110532404 LOC106572363 coding downstream 35626 55192353 ~ 55207365 (+)
LOC110532406 LOC106572360 coding downstream 60879 55217606 ~ 55224372 (+)
LOC110532408 ctbl1 coding downstream 171385 55328112 ~ 55372587 (+)
LOC110532409 LOC106572359 coding downstream 218448 55375175 ~ 55410299 (+)
LOC110532410 LOC106572358 coding downstream 262596 55419323 ~ 55425566 (+)
G820176 NA non-coding upstream 6127 55127150 ~ 55149280 (+)
G820163 NA non-coding upstream 45208 55108836 ~ 55110199 (+)
G820164 NA non-coding upstream 47321 55107689 ~ 55108086 (+)
G820162 NA non-coding upstream 48937 55106092 ~ 55106470 (+)
G820133 NA non-coding upstream 81032 55074162 ~ 55074375 (+)
G820175 LOC106572364 non-coding downstream 364 55157091 ~ 55158268 (+)
G820211 NA non-coding downstream 27877 55184604 ~ 55184824 (+)
G820655 NA non-coding downstream 64852 55221579 ~ 55221882 (+)
G820673 NA non-coding downstream 103634 55260361 ~ 55260802 (+)
G819897 NA other upstream 428031 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2427887 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 2829767 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 3808913 51345372 ~ 51346494 (+)
G815610 NA other upstream 4076465 51078447 ~ 51078942 (+)
G820665 NA other downstream 76531 55233258 ~ 55233798 (+)
dlgap4a dlgap4 other downstream 374310 55531033 ~ 55647541 (+)
G820944 NA other downstream 540913 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 817315 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 904979 56061706 ~ 56063655 (+)

Expression


Co-expression Network