XLOC_002721 (sprn2)


Basic Information

Item Value
gene id XLOC_002721
gene name sprn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20635960 ~ 20637098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005051
TATAAATGATTTTCACTTTTTCTGAAGGAGTCTTCAGTCATGCTGGGCAATCAGAAGCTGCTGATCATATGGGTGTGGATGTTGCTGTTGGCGTCGCTGTGCCCTTGTTTCCACTGTAAGCGGGGTTTTGGTGGCAGGGGCATGAGCAAAGGAGCGGCACCGGCCAAAGCGCCTCCGTCCCAGAGCAAAGGCTCATCATCCAGGCAGGGGCTGAAGCTGGCAGGCGCGGCGGCTGCGGGAGCTATTGGAGGAGCGGCCATCGGCTACGGACTGGGCTCTCTGGGGAGACCGAGGTACGGCCACAACGGCTACTCTGACGGCTATCACCAGCCCGTATACAACCAGTCACACCGTGGGTATTACGGGAGCACGGGCAGCTCAGAGCACATGGGCAGCCTTCTCATCACACTGGGCACGGTCGCTCACGTTGTTATTATGTGGGCTTGATTTAGGCTTGAGGCATTTCTTCTGAATGAAAGAcaatttattatttgaaacaaTAATAAGAAAGGTTTTAAAAAGGAAGATGCAATCATTTATCGAGTATAATGCTGTTCGATGAAATGTAGGCTAAAGAAGaccttttttgttgtgtttttgagtTGTTGCTATaaaccaaacttgttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctggacaagctaatcaaggtctcactaggtatacttgaaacatccaggcaggtgtgttgaggcaagttggagctaaaccctgcagggacaccggccctccaggacccagaTTGGTGCCCCCTGCTATAAAGTAATACAGCTTTGGtcagaagttaacgagaattgtTTATTATATAACTCATTACATTGTGTTTAATTACTACCCACCCCCACACTAGACCCCTTACAGCAACGTAAAAACATCAATTATTGTTGTACCGTTTTACTAAAATGATGGTAAATTGATGTGTTCATAGAATCTGCAGGTGTATTTCTTATAGAGTTCATCACTAGCTGATGAAAGCTATTTTCACTGATCAGGGCTTAATATGTTCTGTCAATTCAAAGAGGGTGGGAAAACGCAGTATGCTGTGTGAAGAAAATGTTTTATGTGGAgttttctttcaaaaaaaaaaagaaaa

Function

symbol description
sprn2 Predicted to act upstream of or within protein homooligomerization. Located in cell surface. Is expressed in brain.

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041221-1 Predicted to act upstream of or within protein homooligomerization. Located in cell surface. Is expressed in brain.

Ensembl:

ensembl_id ENSDARG00000057665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005051 True 1139 mRNA 0.46 1 20635960 20637098

Neighbor

gene id symbol gene type direction distance location
XLOC_002720 NA coding downstream 17147 20616776 ~ 20618813 (-)
XLOC_002719 nsd3 coding downstream 47071 20543279 ~ 20588889 (-)
XLOC_002718 plpp5 coding downstream 98898 20527427 ~ 20537062 (-)
XLOC_002717 ddhd2 coding downstream 111368 20503886 ~ 20524592 (-)
XLOC_002716 BX294119.1 coding downstream 152030 20483814 ~ 20483930 (-)
XLOC_002722 rassf2b coding upstream 3903 20641001 ~ 20650302 (-)
XLOC_002723 kcnip3b coding upstream 16618 20653716 ~ 20706270 (-)
XLOC_002724 NA coding upstream 205820 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 coding upstream 271344 20908442 ~ 20908556 (-)
XLOC_002726 pcdh1a coding upstream 283266 20920364 ~ 21054059 (-)
XLOC_002714 NA non-coding downstream 179953 20448639 ~ 20456007 (-)
XLOC_002710 NA non-coding downstream 398989 20234014 ~ 20236971 (-)
XLOC_002708 CR450836.1 non-coding downstream 484632 20143797 ~ 20151328 (-)
XLOC_002730 BX957322.2 non-coding upstream 933098 21570196 ~ 21573457 (-)
XLOC_002731 NA non-coding upstream 990709 21627807 ~ 21649728 (-)
XLOC_002732 NA non-coding upstream 1009056 21646154 ~ 21843863 (-)

Expression


Co-expression Network