XLOC_027212 (cmasa)


Basic Information

Item Value
gene id XLOC_027212
gene name cmasa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14727018 ~ 14737102 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053613
ACTACGGTTACGTTACAGGCGTGACAAACTTGAGACGTGGTCTATTGCCAGCTTTTATGGTTTATTTGAGAAGATAATTACATCAGAATGAAATAAACGCCCTGTAGTTCGAGTCTGAATAATTGGAGGAACCTTTTTTAATCAACCCAATCGTTCGCACTACGTGTGGAAATATTAATTGGCTGGAAACAGTAATGGACGCAGTAAATGAAAACGGTAAACGCGCTATGAAGGACGACAGTCATGGGAACAGTACCAGCCCAAAACGAAGAAAATCCAGACACATCTCTGCTCTTATTCTGGCCCGTGGAGGGAGTAAAGGAATCCCCCTGAAGAACATTAAGATGCTTGCAGGGGTTCCCCTGATCGGATGGGTGATCAGAGCGGCTGTGGACTCCAATGTCTTTAACAGtgtttgggtgtctACTGATCACGAAGAGATCGCCAAAGTGGCCTTGGCTTGGGGTGCAAAGGTGCACAAGAGGAGCCCAGAAGTGTCCCAGGACTCCTCCAGCTCACTGGACACCATTCGGGAGTTCAGCAGACAGCACCGAGAGGTGGATGTTATCTGTAACATCCAGGCCACGTCTCCGTGTTTGCACCCAAAACATCTCACAGAGGCTGTGGAACTCATAACGAAACAAGGGTACGATTCAGTCTTCTCTGTGGTCCGCAGGCACAATTTTCGATGGAAAGAGGTTGAGAAAGGAGGAGATTGCAGCACTGAACCGATGAACCTGAACCCAGCTTGCAGGCCGCGGCGTCAGGACTGGAGTGGAGAACTGTGTGAAAATGGCTCTTTTTACTTCGCAAAGAAAGAGCTCATAGAACAAGGGCTTCTTCAGGGTGGAAAGAAAACATACTATGAAATGAAGCCTGAGTACAGCGTGGATATTGATGTGGACATAGACTGGCCTGTTGCTGAGCAAAGAGTTCTGAGGTTTGGATACTTTGGGAAGGACAAACCTGAAGTTGTGAGGCTCTTGCTGTGTAACGTGTCTGGATGTCTGACAGACGGTCAGATCTACACCTCAGCGAGTGGAGAGGAGATGGTGTCCATCAACATCAGAGACCAGATCGGCATCAGCATGCTTAAGAAAGAAGGAGTGAAGAGGATGGGCTGTCCTCTCCTGCACCACATGGACGACAAACTGAAGGAGGTGGAGAGAATCATGGTGGAGGAAAAGCTGGAGTGGAAAGAGGTGGCGTATTTAGGGAATGATGAAGCAGATGTGAAGTGTCTGGAATTGGCAGGGTTGAGTGGAGTACCTGTGGACGCCCCGACGGTGGCGCTCAACCACACTAAATATACCTGCCACAACGCAGCGGGTCACGGGGCAGTGCGCGAGTTTGCCGAACACATCCTTCTCCTGAAGAAGAAGGCCAAGTCTCAGATGGAGCAGGACAGAATCTGCAGagatgcattttaaaattgtaccATGAAGGAATTTAAACATGGCTAAAGTGAAACGATACTGCATTTATGGAAAAACACTAATATTACACCACTACAGCCTATAGTAGTCTCCAATGTCTGTGCATGTTTAACAGAAGGAAgtactaataaaattaaatacaaa
>TCONS_00053614
TTTATGGTTTATTTGAGAAGATAATTACATCAGAATGAAATAAACGCCCTGTAGTTCGAGTCTGAATAATTGGAGGAACCTTTTTTAATCAACCCAATCGTTCGCACTACGTGTGGAAATATTAATTGGCTGGAAACAGTAATGGACGCAGTAAATGAAAACGGTAAACGCGCTATGAAGGACGACAGTCATGGGAACAGTACCAGCCCAAAACGAAGAAAATCCAGACACATCTCTGCTCTTATTCTGGCCCGTGGAGGGAGTAAAGGAATCCCCCTGAAGAACATTAAGATGCTTGCAGGGGTTCCCCTGATCGGATGGGTGATCAGAGCGGCTGTGGACTCCAATGTCTTTAACAGGTCGTGCTGTGTGACGTCAGCATCCATATATATATCTGTATGGTTGCTTTTGAAATATTTGCAGTATTGTCTCTTATGCCTGCttttgcagtgtttgggtgtctACTGATCACGAAGAGATCGCCAAAGTGGCCTTGGCTTGGGGTGCAAAGGTGCACAAGAGGAGCCCAGAAGTGTCCCAGGACTCCTCCAGCTCACTGGACACCATTCGGGAGTTCAGCAGACAGCACCGAGAGGTGGATGTTATCTGTAACATCCAGGCCACGTCTCCGTGTTTGCACCCAAAACATCTCACAGAGGCTGTGGAACTCATAACGAAACAAGGGTACGATTCAGTCTTCTCTGTGGTCCGCAGGCACAATTTTCGATGGAAAGAGGTTGAGAAAGGAGGAGATTGCAGCACTGAACCGATGAACCTGAACCCAGCTTGCAGGCCGCGGCGTCAGGACTGGAGTGGAGAACTGTGTGAAAATGGCTCTTTTTACTTCGCAAAGAAAGAGCTCATAGAACAAGGGCTTCTTCAGGGTGGAAAGAAAACATACTATGAAATGAAGCCTGAGTACAGCGTGGATATTGATGTGGACATAGACTGGCCTGTTGCTGAGCAAAGAGTTCTGAGGTTTGGATACTTTGGGAAGGACAAACCTGAAGTTGTGAGGCTCTTGCTGTGTAACGTGTCTGGATGTCTGACAGACGGTCAGATCTACACCTCAGCGAGTGGAGAGGAGATGGTGTCCATCAACATCAGAGACCAGATCGGCATCAGCATGCTTAAGAAAGAAGGAGTGAAGGTGATTTTACTTGAAACATACCCCATAGCAAAAGCAT
>TCONS_00053615
ATGGACGCAGTAAATGAAAACGGTAAACGCGCTATGAAGGACGACAGTCATGGGAACAGTACCAGCCCAAAACGAAGAAAATCCAGACACATCTCTGCTCTTATTCTGGCCCGTGGAGGGAGTAAAGGAATCCCCCTGAAGAACATTAAGATGCTTGCAGGGGTTCCCCTGATCGGATGGGTGATCAGAGCGGCTGTGGACTCCAATGTCTTTAACAGtgtttgggtgtctACTGATCACGAAGAGATCGCCAAAGTGGCCTTGGCTTGGGGTGCAAAGGTGCACAAGAGGAGCCCAGAAGTGTCCCAGGACTCCTCCAGCTCACTGGACACCATTCGGGAGTTCAGCAGACAGCACCGAGAGGTGGATGTTATCTGTAACATCCAGGCCACGTCTCCGTGTTTGCACCCAAAACATCTCACAGAGGCTGTGGAACTCATAACGAAACAAGGGTACGATTCAGTCTTCTCTGTGGTCCGCAGGCACAATTTTCGATGGAAAGAGGTTGAGAAAGGAGGAGATTGCAGCACTGAACCGATGAACCTGAACCCAGCTTGCAGGCCGCGGCGTCAGGACTGGAGTGGAGAACTGTGTGAAAATGGCTCTTTTTACTTCGCAAAGAAAGAGCTCATAGAACAAGGGCTTCTTCAGGGTGGAAAGAAAACATACTATGAAATGAAGCCTGAGTACAGCGTGGATATTGATGTGGACATAGACTGGCCTGTTGCTGAGCAAAGAGTTCTGAGGTTTGGATACTTTGGGAAGGACAAACCTGAAGTTGTGAGGCTCTTGCTGTGTAACGTGTCTGGATGTCTGACAGACGGTCAGATCTACACCTCAGCGAGTGGAGAGGAGATGGTGTCCATCAACATCAGAGACCAGATCGGCATCAGCATGCTTAAGAAAGAAGGAGTGAAGGTGATTTTACTTGAAACATACCCCATAGCAAAAGCATTAGCTGTCAGACTGTCTGAGAGGATGGGCTGTCCTCTCCTGCACCACATGGACGACAAACTGAAGGAGGTGGAGAGAATCATGGTGGAGGAAAAGCTGGAGTGGAAAGAGGTGGCGTATTTAGGGAATGATGAAGCAGATGTGAAGTGTCTGGAATTGGCAGGGTTGAGTGGAGTACCTGTGGACGCCCCGACGGTGGCGCTCAACCACACTAAATATACCTGCCACAACGCAGCGGGTCACGGGGCAGTGCGCGAGTTTGCCGAACACATCCTTCTCCTGAAGAAGAAGGCCAAGTCTCAGATGGAGCAGGACAGAATCTGCAGagatgcattttaaaattgtaccATGAAGGAATTTAAACATGGCTAAAGTGAAACGATACTGCATTTATGGAAAAACACTAATATTACACCACTACAGCCTATAGTAGTCTCCAATGTCTGTGCATGTTTAACAGAAGGAAgtactaataaaattaaatacaaatgtgttgttgtttttggtgtccacatctaataaaatgaaaaaagctTATCAAATGCTAGTAAAAGTGCTTTTACTCAGATTACTTTGAAGAAAACAAGAAGTCAAAATATGGATGGAAAAAAGCCATCATTCAGagtaaaactataataaatagagaagaataaatgaaaagaaactgTGAACTCTGCCGGCGAATGGGTAAAAAGGATTCAattaattaaaagcattaaaatgaggaagatttataaaataaatacgaGTGGATATCTTCTGTAAATCaagagaaataaatatttatttgtttactaatttaaaatgacaatttttgcTCATAAAATAACAACAAGACGTTCTATtttattgggaaaaaataaacgctGCATTACCTTTTTGATAGCTTGAATACTTTAGTTTCTCCAATATATACACTAGAGGGCAGCTTTGTGCAAACAAAAAACTCAGATATCCACCTTGTGGTGAGCTGCTAAGGATACTGTCAGTA

Function

symbol description
cmasa Enables N-acylneuraminate cytidylyltransferase activity. Predicted to be involved in N-acetylneuraminate metabolic process. Located in nucleus. Is expressed in several structures, including axial mesoderm; central nervous system; liver; notochord; and pleuroperitoneal region. Orthologous to human CMAS (cytidine monophosphate N-acetylneuraminic acid synthetase).

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-277 Enables N-acylneuraminate cytidylyltransferase activity. Predicted to be involved in N-acetylneuraminate metabolic process. Located in nucleus. Is expressed in several structures, including axial mesoderm; central nervous system; liver; notochord; and pleuroperitoneal region. Orthologous to human CMAS (cytidine monophosphate N-acetylneuraminic acid synthetase).

Ensembl:

ensembl_id ENSDARG00000057334

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053613 False 1580 mRNA 0.47 8 14727018 14736600
TCONS_00053614 False 1187 lncRNA 0.47 6 14727071 14734283
TCONS_00053615 True 1945 mRNA 0.43 8 14727212 14737102

Neighbor

gene id symbol gene type direction distance location
XLOC_027211 BX571719.2 coding upstream 1804 14725074 ~ 14725214 (+)
XLOC_027210 kcnj8 coding upstream 7164 14717502 ~ 14719854 (+)
XLOC_027209 abcc9 coding upstream 13245 14660769 ~ 14713773 (+)
XLOC_027208 BX571705.1 coding upstream 318720 14399472 ~ 14408298 (+)
XLOC_027207 nuak1a coding upstream 354175 14360372 ~ 14372843 (+)
XLOC_027214 NA coding downstream 30880 14767982 ~ 14770585 (+)
XLOC_027215 shisal1a coding downstream 89197 14826299 ~ 14863510 (+)
XLOC_027216 akr1b1.1 coding downstream 162618 14899720 ~ 14910386 (+)
XLOC_027217 psmc2 coding downstream 189846 14926948 ~ 14932359 (+)
XLOC_027218 tspan33a coding downstream 220258 14957360 ~ 14968641 (+)
XLOC_027205 NA non-coding upstream 538289 14185166 ~ 14188729 (+)
XLOC_027204 CR786571.4 non-coding upstream 550617 14174367 ~ 14176401 (+)
XLOC_027203 NA non-coding upstream 559156 14162343 ~ 14167862 (+)
XLOC_027223 NA non-coding downstream 334372 15071474 ~ 15076052 (+)
XLOC_027224 NA non-coding downstream 367592 15104694 ~ 15114467 (+)
XLOC_027225 NA non-coding downstream 446403 15183505 ~ 15240713 (+)
XLOC_027228 NA non-coding downstream 1132110 15869212 ~ 15881144 (+)

Expression


Co-expression Network