G821408 (pacsin1)


Basic Information

Item Value
gene id G821408
gene name pacsin1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56052203 ~ 56055971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU934012
TTCTCAACAAACTTGTTTTCCCCTTTCAAACCAATATCGCAATATTGACACCATCACAACAACTTTGATTCAGGATTTTCATTACTATCTTAATTATTATCATAATCATAATCATCTTTATGCATATTTAAATGAACCTTTTGTTACATTAAGATGAACAGGCACTACACCAGTTAGGAGATCCAATTACATCACTAACTAGAAACATACATACACTGCTAATACAGGGGTTTCACGACATGAGCCGTGTCCCCCTTGTGTGCATAAGGAAGAGAAAAATCAACATTAAAAAGCATTTACATATACACTGTTTTTACTGCCTCAATGTAGTTAGGTTTCCTTTCCAACTCAACACAGTTGTACAGTTACAATAGAATATCATCTTTAAATTACATCATCATATACAAATCTGACAGCGTGGGGTAACGTCACGCTCTGGTACATTGACAATTCCATTGCAATGAAATTCATACGATATGGTACCTATTACTTAATATGCTTTTCCTTTGCTGTTAACACATTTACATGTATGACACTACATTTTTCTTAGTATTCGATCACTtgcattttttcttttttttttctttacaatTACACAACTCATGATGATAAGGATGTTTGACCCCAAAATATCTACccgagatgtgtgtgtgtgtgttcctgtgtgtgtgtgtgcgtgtgtaaagGACATAGGATATCTCAATGATATGAATTATTTTTGCTAGGCTGGACAGCTTACACTAATACACATTACTTGTGAGCTGGTGATGTGATCTCTCAACAGTGATACCAAAACCTGGTGAAGTCTCCTCTTAAGCCTCAACATAAACACATCCTGTCGTTAGAGAATGTTCTACGACATCAAACTTGAAGAGAGACCTACTGCATAACCTCATGTTCATGAGCATTCTGCTCTCACAACATCATTGCATATCTGATTTAAACAGCTTACCATTGGCAACCATATTTGCATCGGACAACATCTGATAAGTTTGATTTCTCAACAAGTACTGTAGTGTTTtctgtatatttaagcaataaggcacgaggaggtgccttattgctgttataaactggttcccaatgtaattagagcagtaaaagtACATGTGTATTCAAAGTGGGTGCTGCATTAGGTGTGAGCATGTGAAGTATACTACTGGGAGCATTCTAAAGTAGAGTTAATTACTGTAGACAAAGACATGATTTATTATGTACTGTGGTCACTGTTGTAtgcaactggcctacctggttaaagaaagattaaataaaaaataaatataaaatgctCTTGTCTTCCCCCATGTGGATCGCCTATTGAATGAACACAGAAATATTCAGAGGACAGGAAGCAGTTAGTTGCATGAGTTGCATCTTGACAAGAAAATCCTTGACAGGGTTATGTGAGTTATTGCATGGATAGAGAGAGTTTTATGCATTTTCGGATTTCGGTCATTCTTTGGCCTAAGTAGGTAAAGGGGCTCAAAACCACTTTTTTTTTCTGGTAGCGTTCTCTATGACAATGGAGCAaaacatgcctagttaaatacagcaTGTCTCCTTCCATGCCCCTACAATAGTACATTCATGTCCACGTTTCCATTTTAAGACAAGGATCTGCAGCATGGTACCGTCAAGATTGATGTTCCTATTTTACCAGGAGACAACCATCGAACAGTAACATAGTTCAAAGCCATTTTTCCTATATGCTGTTTTCCCCCTACAGCAGGAAAACAACTAAATTCACATTAAATATGCCTGAATACTTCACCTGAACAATCAAATTGTCCAAAACGTTCTTGTCAGCATGACAGATTAAATCAAAGCAAGCTGGTGATAATACCTTGCCTACTGACCCTAAAATGTTCCCTCACAGGTATTCTAGATAGAACACAGCAATAGATCCAAATGAACAGATATTCTAAAAATACCTCGCAATGAAATGGAAATGAGACGTTATGATTCAATGGTGgtgatggggaagagagagaaaaacagctaTCCAGCCTCTCCACTTCCGGGGATGAAGGCAGACACAAGCTCATGGTGTTATTCcaatgctgtgtctgtgtctaatGGTGAACTCTGGTCCTCTGCATTGGTCATATCAGGGGATTAGTTGCATCTTGTAGCCGTAATATGGCTTGGAGGTTAAGGGAATGCATGTTGCATAGCACATGCTGCTATTGCAAACCAATTGAGAAACAGAGACAACAGATACTGTACCACTGCACAACTGGTAAAAGGGATGAGACCAAATCACAAAAGAGAAAATAATCAAATCTAGGATACATTTTGTGGTACTTTTAACACTACACAGCATTCCCAATGTAAGGAGGAGGACTGAACACACAGCATCGAAACTGCTACACAAAACGGTGTCATATATACACAACGCAGGCCGAGTAGCTTGTTCTGGTTAAACCGGCAGGTAAATATAATTGGTTACATTATCGTCACACTGTTATAGGAGAATATACTGCAAAAACGTTGAATCATCCGCATCATCTTTATATTGAACACAGCTACACAAATGTGTCCCTGCATTGGCTTGATATTACagtatgtttgagtgtgtgtactCTGGAATAAATGCTGCTCCTGTTTTAGTGTTTATGTCCTCCTCACTCCAAATACtggataaatataatataatatactactaatatactaaGATTTTATTTAGGCAAGACTCTGATTTGCGCATCTGTTGGGCAAGGGATGTGTTGCTCATAAGTCTCTGGCTATGTGCAGTGCGATTGGATGAGACAGTCCGAGCTGCCTCCAATGGCATGTCCTCCTCCTTTGGGGTCATTAGATCTCCTCGACGTAATTGGCCGGGTACAGTCCCTCTCGGCCTGTATCCAGGCGACCTCTACACCAGCCTTGGTCATCTTCATCCCCTGTCCGTCATAATCATATAGAGCACGCACTCGGACCCCGGATGCGGTCCCGGTCCCTGCACCCCCTTTCCCTGcactgccagagtcttcctcgaAGGAGTTTCCATTTCCACCCCCGTTGGTCTCACCGCCTGAGTAGGCTGCAGGTGCATCGTCATCGGACCACTCAGTGGAGTAGGCCTGGTTCTTTTCATAGCTGC
>TU934013
TTCTCAACAAACTTGTTTTCCCCTTTCAAACCAATATCGCAATATTGACACCATCACAACAACTTTGATTCAGGATTTTCATTACTATCTTAATTATTATCATAATCATAATCATCTTTATGCATATTTAAATGAACCTTTTGTTACATTAAGATGAACAGGCACTACACCAGTTAGGAGATCCAATTACATCACTAACTAGAAACATACATACACTGCTAATACAGGGGTTTCACGACATGAGCCGTGTCCCCCTTGTGTGCATAAGGAAGAGAAAAATCAACATTAAAAAGCATTTACATATACACTGTTTTTACTGCCTCAATGTAGTTAGGTTTCCTTTCCAACTCAACACAGTTGTACAGTTACAATAGAATATCATCTTTAAATTACATCATCATATACAAATCTGACAGCGTGGGGTAACGTCACGCTCTGGTACATTGACAATTCCATTGCAATGAAATTCATACGATATGGTACCTATTACTTAATATGCTTTTCCTTTGCTGTTAACACATTTACATGTATGACACTACATTTTTCTTAGTATTCGATCACTtgcattttttcttttttttttctttacaatTACACAACTCATGATGATAAGGATGTTTGACCCCAAAATATCTACccgagatgtgtgtgtgtgtgttcctgtgtgtgtgtgtgcgtgtgtaaagGACATAGGATATCTCAATGATATGAATTATTTTTGCTAGGCTGGACAGCTTACACTAATACACATTACTTGTGAGCTGGTGATGTGATCTCTCAACAGTGATACCAAAACCTGGTGAAGTCTCCTCTTAAGCCTCAACATAAACACATCCTGTCGTTAGAGAATGTTCTACGACATCAAACTTGAAGAGAGACCTACTGCATAACCTCATGTTCATGAGCATTCTGCTCTCACAACATCATTGCATATCTGATTTAAACAGCTTACCATTGGCAACCATATTTGCATCGGACAACATCTGATAAGTTTGATTTCTCAACAAGTACTGTAGTGTTTtctgtatatttaagcaataaggcacgaggaggtgtggtatATGTGTATTCAAAGTGGGTGCTGCATTAGGTGTGAGCATGTGAAGTATACTACTGGGAGCATTCTAAAGTAGAGTTAATTACTGTAGACAAAGACATGATTTATTATGTACTGTGGTCACTGTTGTAtgcaactggcctacctggttaaagaaagattaaataaaaaataaatataaaatgctCTTGTCTTCCCCCATGTGGATCGCCTATTGAATGAACACAGAAATATTCAGAGGACAGGAAGCAGTTAGTTGCATGAGTTGCATCTTGACAAGAAAATCCTTGACAGGGTTATGTGAGTTATTGCATGGATAGAGAGAGTTTTATGCATTTTCGGATTTCGGTCATTCTTTGGCCTAAGTAGGTAAAGGGGCTCAAAACCACTTTTTTTTTCTGGTAGCGTTCTCTATGACAATGGAGCAaaacatgcctagttaaatacagcaTGTCTCCTTCCATGCCCCTACAATAGTACATTCATGTCCACGTTTCCATTTTAAGACAAGGATCTGCAGCATGGTACCGTCAAGATTGATGTTCCTATTTTACCAGGAGACAACCATCGAACAGTAACATAGTTCAAAGCCATTTTTCCTATATGCTGTTTTCCCCCTACAGCAGGAAAACAACTAAATTCACATTAAATATGCCTGAATACTTCACCTGAACAATCAAATTGTCCAAAACGTTCTTGTCAGCATGACAGATTAAATCAAAGCAAGCTGGTGATAATACCTTGCCTACTGACCCTAAAATGTTCCCTCACAGGTATTCTAGATAGAACACAGCAATAGATCCAAATGAACAGATATTCTAAAAATACCTCGCAATGAAATGGAAATGAGACGTTATGATTCAATGGTGgtgatggggaagagagagaaaaacagctaTCCAGCCTCTCCACTTCCGGGGATGAAGGCAGACACAAGCTCATGGTGTTATTCcaatgctgtgtctgtgtctaatGGTGAACTCTGGTCCTCTGCATTGGTCATATCAGGGGATTAGTTGCATCTTGTAGCCGTAATATGGCTTGGAGGTTAAGGGAATGCATGTTGCATAGCACATGCTGCTATTGCAAACCAATTGAGAAACAGAGACAACAGATACTGTACCACTGCACAACTGGTAAAAGGGATGAGACCAAATCACAAAAGAGAAAATAATCAAATCTAGGATACATTTTGTGGTACTTTTAACACTACACAGCATTCCCAATGTAAGGAGGAGGACTGAACACACAGCATCGAAACTGCTACACAAAACGGTGTCATATATACACAACGCAGGCCGAGTAGCTTGTTCTGGTTAAACCGGCAGGTAAATATAATTGGTTACATTATCGTCACACTGTTATAGGAGAATATACTGCAAAAACGTTGAATCATCCGCATCATCTTTATATTGAACACAGCTACACAAATGTGTCCCTGCATTGGCTTGATATTACagtatgtttgagtgtgtgtactCTGGAATAAATGCTGCTCCTGTTTTAGTGTTTATGTCCTCCTCACTCCAAATACtggataaatataatataatatactactaatatactaaGATTTTATTTAGGCAAGACTCTGATTTGCGCATCTGTTGGGCAAGGGATGTGTTGCTCATAAGTCTCTGGCTATGTGCAGTGCGATTGGATGAGACAGTCCGAGCTGCCTCCAATGGCATGTCCTCCTCCTTTGGGGTCATTAGATCTCCTCGACGTAATTGGCCGGGTACAGTCCCTCTCGGCCTGTATCCAGGCGACCTCTACACCAGCCTTGGTCATCTTCATCCCCTGTCCGTCATAATCATATAGAGCACGCACTCGGACCCCGGATGCGGTCCCGGTCCCTGCACCCCCTTTCCCTGcactgccagagtcttcctcgaAGGAGTTTCCATTTCCACCCCCGTTGGTCTCACCGCCTGAGTAGGCTGCAGGTGCATCGTCATCGGACCACTCAGTGGAGTAGGCCTGGTTCTTTTCATAGCTGC

Function

symbol description
pacsin1 Enables phospholipid binding activity. Involved in plasma membrane tubulation. Located in cytoplasm.

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU934012 False 3103 lncRNA 0.40 3 56052203 56055971
TU934013 True 3057 lncRNA 0.40 3 56052203 56055971

Neighbor

gene id symbol gene type direction distance location
LOC110532424 spdef coding upstream 215 56042832 ~ 56051988 (+)
LOC110532421 cssa15h6orf106 coding upstream 17050 56028537 ~ 56035153 (+)
taf11 taf11 coding upstream 92333 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 222619 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 225150 55703585 ~ 55827053 (+)
LOC110532428 NA coding downstream 47594 56103492 ~ 56112044 (+)
LOC110532426 NA coding downstream 63034 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 69783 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 190739 56246710 ~ 56463547 (+)
LOC110532433 LOC106572420 coding downstream 534720 56590691 ~ 56641983 (+)
G821380 NA non-coding upstream 24426 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 32632 56018624 ~ 56019571 (+)
G821377 NA non-coding upstream 55465 55996516 ~ 55996738 (+)
G821371 NA non-coding upstream 66882 55985117 ~ 55985321 (+)
G821369 NA non-coding upstream 71005 55980912 ~ 55981198 (+)
G821433 NA non-coding downstream 31632 56087603 ~ 56088983 (+)
G821459 NA non-coding downstream 88845 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 95215 56151186 ~ 56151527 (+)
G821466 NA non-coding downstream 96556 56152527 ~ 56152755 (+)
G821363 uhrf1bp1 other upstream 76887 55974042 ~ 55975316 (+)
G820944 NA other upstream 354225 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 436802 55531033 ~ 55647541 (+)
G820665 NA other upstream 818405 55233258 ~ 55233798 (+)
G819897 NA other upstream 1324827 54726871 ~ 54727376 (+)
G821409 pacsin1 other downstream 5735 56061706 ~ 56063655 (+)
G822283 NA other downstream 516636 56572607 ~ 56572957 (+)
G822404 NA other downstream 706654 56762625 ~ 56763540 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51122 NA unknown CI01000009 null 1680146 ~ 1681966 (+)
grasscarp (Ctenopharyngodon idella) G153243 NA non-coding CI01000029 null 2721831 ~ 2722141 (-)
striped catfish (Pangasianodon hypophthalmus) G247243 NA non-coding NC_047610.1 CM018556.1 442399 ~ 450431 (-)
bowfin (Amia calva) G46714 NA non-coding CM030125.1 CM030125.1 42564530 ~ 42569885 (-)
mexican tetra (Astyanax mexicanus) G43188 NA non-coding NC_035901.1 CM008304.1 16747826 ~ 16748678 (+)