G821409 (pacsin1)


Basic Information

Item Value
gene id G821409
gene name pacsin1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56061706 ~ 56063655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU934014
cttctGAACGTCGTGTTTGCACTTGTCTGTTTTCTCGTGGAGTTTCTTCTGCTGGTCAGTTGTGACGGAGGCCTGTGTCTTCCCATCTGCCTCACGGGTGGCGGCCAGTTTCTCCTCCTTACATGCCATGTGGTATGTTTTCTTAGCAGTCTCCATCTCTTTGAGCTTCTTGGCCCATGGTTTCTGGGCCTTCTTGAAGCCCTCGTCGGCCTCTTTGGCCTCCTTGAAGCCTCCGATCATCTGCTTGTGGTACGCCTCCTTCTGCCAGTTCTTGACCTTCTCCAGGTCTTCGTTGAGCAGGCCGTTCTTCACCTCCTGGTGCAGCTCACTCACCTTCTCAGCCTCGGTCATCACACCCAGCCACGCCCTCTCCACGGTGCCATACTGTGGTCCTTTCTCGATCAGCTGTCTCCATCTCTTGGACCAGGCGGTCAGCTGGTCACCATAGGCCTTCTCAATCTTGGCACGTTCCTGAAGGCAGCCCATGAGGTCATTGCAGAGCCGGTGGCCGTCGTCAATCCGCTTGACGGCACGCTTGTAGTTCCCCACCTGAGAATAGTGAGAGGTTGGATTAAAGGTCCAAGTTACATAAAATAGGAAAACACAA

Function

symbol description
pacsin1 Enables phospholipid binding activity. Involved in plasma membrane tubulation. Located in cytoplasm.

NR:

description
protein kinase C and casein kinase substrate in neurons protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU934014 True 607 TUCP 0.54 3 56061706 56063655

Neighbor

gene id symbol gene type direction distance location
LOC110532424 spdef coding upstream 9718 56042832 ~ 56051988 (+)
LOC110532421 cssa15h6orf106 coding upstream 26553 56028537 ~ 56035153 (+)
taf11 taf11 coding upstream 101836 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 232122 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 234653 55703585 ~ 55827053 (+)
LOC110532428 NA coding downstream 39910 56103492 ~ 56112044 (+)
LOC110532426 NA coding downstream 55350 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 62099 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 183055 56246710 ~ 56463547 (+)
LOC110532433 LOC106572420 coding downstream 527036 56590691 ~ 56641983 (+)
G821408 pacsin1 non-coding upstream 5735 56052203 ~ 56055971 (+)
G821380 NA non-coding upstream 33929 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 42135 56018624 ~ 56019571 (+)
G821377 NA non-coding upstream 64968 55996516 ~ 55996738 (+)
G821371 NA non-coding upstream 76385 55985117 ~ 55985321 (+)
G821433 NA non-coding downstream 23948 56087603 ~ 56088983 (+)
G821459 NA non-coding downstream 81161 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 87531 56151186 ~ 56151527 (+)
G821466 NA non-coding downstream 88872 56152527 ~ 56152755 (+)
G821363 uhrf1bp1 other upstream 86390 55974042 ~ 55975316 (+)
G820944 NA other upstream 363728 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 446305 55531033 ~ 55647541 (+)
G820665 NA other upstream 827908 55233258 ~ 55233798 (+)
G819897 NA other upstream 1334330 54726871 ~ 54727376 (+)
G822283 NA other downstream 508952 56572607 ~ 56572957 (+)
G822404 NA other downstream 698970 56762625 ~ 56763540 (+)
LOC110532462 LOC106572392 other downstream 1278746 57342345 ~ 57958962 (+)

Expression


Co-expression Network