XLOC_027214


Basic Information

Item Value
gene id XLOC_027214
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14767982 ~ 14770585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057673
TTGAGGAGGGGAAAAAAGAGCCATTTGCACCTCCACAAATGAGAGTACTCCAGGAAGTCCATTAATTGAAGCGGTTCAGGGAAAGCAGCTGCTTATCGGAGCATTTAAAGGCAAGTGAGCGAGTCGGAGCGGCTTCAGCAAGATAAATGTGAATTTACTTGCAGAGCCTGACAGCTTTCGACCCGGTCCTGGATTCGGACTGTTTAGAAATTCACTAGAGATTCTTGGGCCTCAGCTGAGAGCTGAGTACAATTTTtccttaattatatattttttcttctttcaaGGCTGTCTTACACATTTAGCAAGTTTAAGAATCCAACGAACCATACACTGATAAAGCACAATTTGAATTGGGCTGAGGATCAAATGTGCTGAAGCATGGCAAACTATTGCCTTTTGTCCTGTGAACAAGCTTTTGAAACCATCAAATATTAAatacttttctctctgctaccggACCTAGATACTCATACTGTAAGTACAACATTTTAAGGTTTATTCCTAAAAAAAAGCAGTCAAATAGGTGGTTAAAAAaagtgtataataatattaaaagaaacTTTTCATTCTTCTATTACACATTTTTCAATTTACACAGTCACATTTGGGAATCTTTACCATTAATTGgcattaatttgatcatttattttatttcaaggttTTCCCAGCAGCACACAACGTCACAAGACGTTATCATTAGGTTCGATTTtggttgtgatgtcaagtgaccagAATTCAGCGTCAAAGTACAATACTTTGAactccaataatgacgtcaaatgatgttgatatttggttgatttcaagttgtgtgaccaaaatccaacgtcaatcttaaaccaacgtcatactgaTGTGAAATAcggacatttatttgtcaggtatggcaaccaaaatccaacatctgatagacatcatagtggtaacgtccacacaacgtcaagctgtaaaatcattaaatgttgatatttgggtgactttaagttgtgttggaaagtcaccaaaatccaatgtcgggTATTAAACCAATGTTATAATGACGTGAAACACTGACATTAATTCATcaagttatggcaaccaaaatccaacgtttgatagacgtcatagtggtaacatccacacagtGCCAAGCTGTGACACCATAAGACGtttatatttgcttaattttaggttgtgttggacagTTAGCAAAAATCTAATGTCGTGCCAACGTATTAACCCAACCTCATATTGACGTGAaatttggcaaccaaaatccatcgTCTGACAGACATCATCGTGGTAACATCCACATAAAGTCAAGCTgtacatcattagacattgatatttggttgattttaggtttatACTTTGGCTTGACATTGGATTCTGACATCAAACcgatttttatttcaaaacaaaatgcaaagtccCCATGATGttgttggggtacaacgttaatctgatgtcatgttgatgtcctgtgccggctgtttttattttttattttttatctaaaaaagACTTTTCAGTTAAAAATTGTTTATTACATTTGAGTTCATGTTCATGATCCTAAATGAGAAAGCACTGAatgctgcagaaaaaaaaaactttgcaaacaaaaatatttggCTTAGTTCAGTGTGCAGCCAGCTCATTAGCAAGTctagaaaattaatgaaataaaaccaACAGTTAAGGACATAAGAAAAGGAGGGGGAGTGAGAGCATTACACAAATAGCTAAAGGTTTGTGTTTTTCCTGCATTTCTAGGCTTGAacaacttaaagaaaaaaaatcacgatGTGACTGCCCTGAACTGAGCTGTCTGTACCAACTATACCAACAAATCCCCTCAGAAAAACACACAAGAAACTCAGATGCatggaaaatattcaaaaatattagTTTGGTTTCATCATTTGTTTATCCTCATTTTGCTAGTCGAACAACAGATATTTCTTCACTCGTGATCAAGTCTAAAGGTTTCTGCTGCAGCTCCTGACATTTAAGCCTGAATATTTCATCATTATGATGCATTATTGGGTAAAAAATGTCAGTGTGATCCTGCCCACCACACCACAGTCATGCAGTTCAATCTTCAGCAGGAGAATCAGACAGGACCACAGGGCTTTCTGTCAGCCATCTGGATTATTTTACGAGAAACAGGAGAGGTTTGTCAGCTCACTCTTCAGTTCAGTGTAATGGCAAGCAGGAGGCCAGTCTTAAATGTGATCGCAAATCATTCACTGTTTATATGCAAACTAAGTCTGCATCTGATCAACAGGATGATAAAGGTATATGGTTTTATTTTAGTCGCACAATTCATGAACTTTAATTATTCTGTTCTGTATATCATTAGTGGTTTTAGGGAATTGTGAAATTGTTAGAATGATAATGCTTGTCTAAAAAAAGCAAAATGCTTCACAAAAAAATGTGTCACTTtcacaaaaacactttaaaaatgagctttttaggctatttgaaaataaaatttagCAAAACTTCAAGTCACATGGTTTAAATAAAGGTCAAATGTTAAATGAAAACACCAGTGCTCaacttgtaaatgaataatttccaGAATAAAACCAGGAAATAAAGGTTATCGTGACCAACTTC

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0060841 venous blood vessel development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057673 True 2604 lncRNA 0.36 1 14767982 14770585

Neighbor

gene id symbol gene type direction distance location
XLOC_027212 cmasa coding upstream 30880 14727018 ~ 14737102 (+)
XLOC_027213 BX571719.4 coding upstream 34859 14732983 ~ 14733123 (+)
XLOC_027211 BX571719.2 coding upstream 42768 14725074 ~ 14725214 (+)
XLOC_027210 kcnj8 coding upstream 48128 14717502 ~ 14719854 (+)
XLOC_027209 abcc9 coding upstream 54209 14660769 ~ 14713773 (+)
XLOC_027215 shisal1a coding downstream 55714 14826299 ~ 14863510 (+)
XLOC_027216 akr1b1.1 coding downstream 129135 14899720 ~ 14910386 (+)
XLOC_027217 psmc2 coding downstream 156363 14926948 ~ 14932359 (+)
XLOC_027218 tspan33a coding downstream 186775 14957360 ~ 14968641 (+)
XLOC_027219 smo coding downstream 200654 14971239 ~ 14979937 (+)
XLOC_027208 BX571705.1 non-coding upstream 359684 14399472 ~ 14408298 (+)
XLOC_027205 NA non-coding upstream 579253 14185166 ~ 14188729 (+)
XLOC_027204 CR786571.4 non-coding upstream 591581 14174367 ~ 14176401 (+)
XLOC_027223 NA non-coding downstream 300889 15071474 ~ 15076052 (+)
XLOC_027224 NA non-coding downstream 334109 15104694 ~ 15114467 (+)
XLOC_027225 NA non-coding downstream 412920 15183505 ~ 15240713 (+)
XLOC_027228 NA non-coding downstream 1098627 15869212 ~ 15881144 (+)
XLOC_027235 CR749763.5 non-coding downstream 1230653 16001238 ~ 16004425 (+)

Expression


Co-expression Network