XLOC_027217 (psmc2)


Basic Information

Item Value
gene id XLOC_027217
gene name psmc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14926948 ~ 14932359 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053620
GTAATCTCGCCCCTACAGTCACTAACCGAATTTGTTAGCAATCAAGCAAGCAGTCATGCCTGATTATTTAGGAACCGAACAACGCAAAGTAAAAGAAGAGGAGAAAGAGGACAAACCCATTCGAGCTTTGGATGAAGGAGATATTGCACTTCTAAAAACCTATGGCCAAAGCACATATTCCAGACAGATTAAACAAGTGGAAGATGATATTCAGCAGCTTCTGAAGAAAATAAATGAGCTGACAGGTATTAAAGAGTCTGATACAGGTCTGGCTCCTCCGGCACTATGGGATCTGGCAGCAGACAAGCAGACTCTACAGAGTGAGCAGCCTTTGCAGGTGGCCAGATGCACCAAGATCATCAACGCTGACTCTGAGGATCCAAAGTATATCATTAATGTGAAACAGTTTGCCAAGTTTGTGGTGGACCTGAGCGATCAGGTTGCTCCGACTGACATTGAAGAAGGAATGAGGGTTGGCGTTGACAGGAATAAGTATCAGATCCATATTCCTCTGCCACCCAAAATCGATCCTACGGTCACTATGATGCAGGTAGAGGAGAAGCCTGATGTGACCTACAGCGATGTTGGAGGCTGCAAAGAGCAGATCGAGAAGCTCAGAGAGGTGGTCGAGACTCCTCTGCTCCATCCTGAGCGCTTTGTCAACCTGGGTATTGAGCCTCCAAAGGGTGTGTTGTTGTTCGGGCCCCCTGGAACAGGGAAAACCCTGTGTGCCCGAGCTGTGGCTAACCGTACAGACGCCTGCTTCATCAGAGTCATCGGGTCTGAACTGGTCCAGAAGTATGTTGGAGAGGGTGCCAGGATGGTTCGTGAACTCTTTGAGATGGCGAGGACCAAGAAAGCCTGTCTGATCTTCTTTGATGAAATTGATGCTATTGGAGGTGCCCGTTTTGATGATGGCGCTGGAGGTGATAATGAAGTGCAGAGAACGATGCTGGAGCTGATCAACCAGCTGGACGGATTCGATCCCAGAGGGAACATTAAAGTCCTGATGGCCACCAACAGACCAGACACCCTAGATCCTGCTCTGATGAGACCCGGCCGTCTGGACAGAAAGATCGAGTTCAGCCTGCCTGACCTGGAAggaCGTACTCACATCTTCAAGATTCATGCCCGCTCTATGAGTGTGGAGAGAGATATCCGCTTTGAGCTTCTTGCACGACTCTGTCCTAACAGCACAGGTGCTGAGATTCGCAGCGTGTGCACGGAGGCTGGAATGTTCGCCATTAGAGCTCGTAGAAAAATCGCCACGGAGAAAGACTTCCTGGAGGCCGTGAATAAGGTCATCAAGTCTTACGCCAAGTTCAGCGCCACCCCTCGCTACATGACTTACAACTAAACCTCTTGTATgtgcttttctgtttgttttctgcCTGATATAATTCAAAGATTCCTGTCGTTCTGTGATGTCACGTATCCAATAAAAACATTATCCATA
>TCONS_00057138
GCCCGTTTTGATGATGGCGCTGGAGGTGATAATGAAGTGCAGAGAACGATGCTGGAGCTGATCAACCAGCTGGACGGATTCGATCCCAGAGGGAACATTAAAGTCCTGATGGCCACCAACAGACCAGACACCCTAGATCCTGCTCTGATGAGACCCGGCCGTCTGGACAGAAAGATCGAGTTCAGCCTGCCTGACCTGGAAGTA

Function

symbol description
psmc2 Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2).

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly biological_process
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0036402 proteasome-activating ATPase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040426-1327 Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2).

Ensembl:

ensembl_id ENSDARG00000020101

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053620 False 1456 mRNA 0.48 12 14926948 14932359
TCONS_00057138 True 204 lncRNA 0.54 1 14931339 14931542

Neighbor

gene id symbol gene type direction distance location
XLOC_027216 akr1b1.1 coding upstream 16562 14899720 ~ 14910386 (+)
XLOC_027215 shisal1a coding upstream 63438 14826299 ~ 14863510 (+)
XLOC_027214 NA coding upstream 156363 14767982 ~ 14770585 (+)
XLOC_027212 cmasa coding upstream 189846 14727018 ~ 14737102 (+)
XLOC_027213 BX571719.4 coding upstream 193825 14732983 ~ 14733123 (+)
XLOC_027218 tspan33a coding downstream 25001 14957360 ~ 14968641 (+)
XLOC_027219 smo coding downstream 38880 14971239 ~ 14979937 (+)
XLOC_027220 cax1 coding downstream 49495 14981854 ~ 14990926 (+)
XLOC_027221 zc3hc1 coding downstream 73858 15006217 ~ 15010891 (+)
XLOC_027222 ube2h coding downstream 78982 15011341 ~ 15059876 (+)
XLOC_027211 BX571719.2 non-coding upstream 201734 14725074 ~ 14725214 (+)
XLOC_027208 BX571705.1 non-coding upstream 518650 14399472 ~ 14408298 (+)
XLOC_027205 NA non-coding upstream 738219 14185166 ~ 14188729 (+)
XLOC_027223 NA non-coding downstream 139115 15071474 ~ 15076052 (+)
XLOC_027224 NA non-coding downstream 172335 15104694 ~ 15114467 (+)
XLOC_027225 NA non-coding downstream 251146 15183505 ~ 15240713 (+)
XLOC_027228 NA non-coding downstream 936853 15869212 ~ 15881144 (+)
XLOC_027235 CR749763.5 non-coding downstream 1068879 16001238 ~ 16004425 (+)

Expression


Co-expression Network