G822438


Basic Information

Item Value
gene id G822438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56806388 ~ 56808544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU935099
TTATGGTACTGGGCGGGCAGTGGTAGTGTAAAACAAAATGCTGAGGACGGGACACACTAAAATAGTTCTGCTGTCTCTCAAAGCAAAAGTCATTCGCTGTAAGAGCCACCATGCTCTAGAAAGGCAAAGATACATGGATAATAAACTGGGTTTTCTCCCTGCCTGGTCCACAACTGCCATATTAGAGTGGATAAGCTCACAAAGCTCCTATGGAGTCTATGGGAGATTGGGTCTGACTACTATAGAGCCAGGATCTAGGGGTTAACAGCTCTGGTCAGGAGAGAATGGGTCCCTTACCCTCCCTAGCTTTCCTCCCTTCCTGCCTACTGTCCTTACCACTGGTACCTTCCACTTATGAGGACTTGGGCTTGTTTTAAGTGCTGGAGCCTGTCTCCATCTATGGTTATAAAACATCCCCCCCAAATCATTTTAGCAGTATAAAAAGAGTGCTTTTCCACAGAAGCTTTTTGCAGCAGCTTTTCAATGACAGAATGAGGACATGGTCTGTGAATCATTTTAAAACACAGATTCTTCACACTACTCTCCCAAACTAACACAGAACCTGGTTTTCAAATAAATAGCCTACAACTGTGGATAGCAGAGCTGCCCCTTCAAAATAAACAGCAAATCATTCAAATATAGTCTTCACTCATTCTACAGTACTATCTATAATGATATCAGACACATCTCAAATCTTTTAGAAAGGCTAACAGATGAAAGTAACAGCGCCCACTGCTGGCAGGTGTAAATTATTCACACCAAAACATTTGAAGGTCATAAAAACATAAAATGACCCTACAATGACCAAAAGAAGTGTAAATACACTTCATGAAAGATGTTagtatgtatttatatttttaaaaaacactTTGTCCATCTGTTACAGAATGTGTCCAGTAGCCCTTCATAAAATCTTTAAAATTCCCTTGGCCTTTCCTCTGCGGATCCTACTGTGTGACCACCGAGGGGTGAGAGCGAAGCTCTCCTCTTTACCTGAAAGGAGACTCCTACAGCCCAGCTTACCCTCCCTGTCAGATAGTTCACTGTGTCTGCAGGCACAGACTAAGGAAAGTCCCTGAACAGCAGTGAACCCGATTAAGACTAATCAAGCTCTACACACCATTCCTAATGCATGTGTTATCTAAGCAACCCAATTGCATGCATCACATCACAGAGTACTCACATACGGCTGCACACAAAATGAGAGTCCACACATACGAGTGCACACACCATCCCATTTCGGGACTATCATTTTGCATTACATATATTTCACAGTGAAATTATGCCCCTGTCCTGTCCCCCACCTGACCTCAAATTTGAACCATCAACATCAAACTGTTATAAAATGTTTTTAGTACATTCTGTCAAAAGCTTCAGATGTCCCATGAAACTTCAAGTGTGCTCTGAATTCACCAAAACTACATGGTTATATTCAGTCCCCCTGCCACACACCAGCAAGATGCTGAGGTCTGGGGAAGCTCCGCTATGGACTGAAATGGGATACTGCAGCGCTTGACAGCCATGTGCACAGAGAGTAACTTGCCTGGAAGCATTAGAGAGTCCCGCTCTAGccttcccccaccctctctctccttccctgtcaaGTCTCCATTATGTTAAAATTAAAACATCTAAATATTAATTACCAATGATTTAGATCCCATATCACTTCATGTCATAACCCAGTGTGAGAAACATACCCTCAATTATATCAATTAGATAATGAAGAGAAAAATAGATTCAAAAGCATCCCACCAGCCCAACAGTAGATGTGAAAAGCAGCATACCTTGGGTGCTGGGTCTCTTCCTCCTCAGGAAAACCTCCTCTAGCGGCTTCAGGGCACTTTGACATAGACAGAACTTTCCTCAGTCCTTCTGTGAACTCTTGCCTCACATCCACACACAATCACCCTAAGACTGGAGTACTATAGTAAATTGATAAAAATCAGCTCTTGGGAGGGATAAAAACTACACACTCACTGCAATTTATTTCTTGTCCACTCgttcttctgtttttttttactgctgtATCTGCCTGCGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU935099 True 2044 lncRNA 0.43 2 56806388 56808544

Neighbor

gene id symbol gene type direction distance location
LOC110532437 LOC106572423 coding upstream 98061 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 154304 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 164405 56590691 ~ 56641983 (+)
LOC110531212 LOC106567287 coding upstream 342841 56246710 ~ 56463547 (+)
LOC110532427 LOC106572343 coding upstream 675975 56125754 ~ 56132936 (+)
LOC110532442 eif4e3 coding downstream 22200 56830744 ~ 56839626 (+)
LOC110532441 LOC106572418 coding downstream 31173 56839717 ~ 56863877 (+)
LOC110532445 LOC106572414 coding downstream 106038 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 138934 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 140260 56948804 ~ 56950054 (+)
G822436 NA non-coding upstream 1064 56805114 ~ 56805324 (+)
G822435 NA non-coding upstream 1483 56804680 ~ 56804905 (+)
G822434 NA non-coding upstream 2121 56804054 ~ 56804267 (+)
G822423 NA non-coding upstream 16457 56789698 ~ 56789931 (+)
G822412 NA non-coding upstream 30276 56775842 ~ 56776112 (+)
G822470 NA non-coding downstream 61535 56870079 ~ 56871432 (+)
G822471 NA non-coding downstream 63841 56872385 ~ 56872717 (+)
G822473 NA non-coding downstream 68783 56877327 ~ 56877791 (+)
G822474 LOC106572415 non-coding downstream 69839 56878383 ~ 56878743 (+)
G822481 NA non-coding downstream 82456 56891000 ~ 56891203 (+)
G822404 NA other upstream 42848 56762625 ~ 56763540 (+)
G822283 NA other upstream 233431 56572607 ~ 56572957 (+)
LOC110532426 NA other upstream 682203 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 742733 56061706 ~ 56063655 (+)
LOC110532462 LOC106572392 other downstream 533857 57342345 ~ 57958962 (+)
G823373 NA other downstream 1220075 58028619 ~ 58028857 (+)
G823467 NA other downstream 1396719 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1438570 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1580127 58385510 ~ 58390570 (+)

Expression


Co-expression Network