Gene
RNA
| Item | Value |
|---|---|
| gene id | G822473 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 56877327 ~ 56877791 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| microphthalmia-associated transcription factor-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU935170 | True | 465 | lncRNA | 0.41 | 1 | 56877327 | 56877791 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532441 | LOC106572418 | coding | upstream | 13450 | 56839717 ~ 56863877 (+) |
| LOC110532442 | eif4e3 | coding | upstream | 37701 | 56830744 ~ 56839626 (+) |
| LOC110532437 | LOC106572423 | coding | upstream | 169000 | 56661757 ~ 56708327 (+) |
| LOC110532435 | LOC106572422 | coding | upstream | 225243 | 56645780 ~ 56652084 (+) |
| LOC110532433 | LOC106572420 | coding | upstream | 235344 | 56590691 ~ 56641983 (+) |
| LOC110532445 | LOC106572414 | coding | downstream | 36791 | 56914582 ~ 56946999 (+) |
| LOC110532447 | lmod3 | coding | downstream | 69687 | 56947478 ~ 56948805 (+) |
| LOC110531214 | lmod3 | coding | downstream | 71013 | 56948804 ~ 56950054 (+) |
| LOC110531215 | uba3 | coding | downstream | 81257 | 56959048 ~ 56979903 (+) |
| nfascb | LOC106572405 | coding | downstream | 242395 | 57120186 ~ 57136910 (+) |
| G822471 | NA | non-coding | upstream | 4610 | 56872385 ~ 56872717 (+) |
| G822470 | NA | non-coding | upstream | 5895 | 56870079 ~ 56871432 (+) |
| G822438 | NA | non-coding | upstream | 68783 | 56806388 ~ 56808544 (+) |
| G822436 | NA | non-coding | upstream | 72003 | 56805114 ~ 56805324 (+) |
| G822435 | NA | non-coding | upstream | 72422 | 56804680 ~ 56804905 (+) |
| G822474 | LOC106572415 | non-coding | downstream | 592 | 56878383 ~ 56878743 (+) |
| G822481 | NA | non-coding | downstream | 13209 | 56891000 ~ 56891203 (+) |
| G822482 | NA | non-coding | downstream | 13923 | 56891714 ~ 56891979 (+) |
| G822483 | LOC106572415 | non-coding | downstream | 14900 | 56892691 ~ 56907208 (+) |
| G822463 | NA | non-coding | downstream | 66505 | 56944296 ~ 56944813 (+) |
| G822404 | NA | other | upstream | 113787 | 56762625 ~ 56763540 (+) |
| G822283 | NA | other | upstream | 304370 | 56572607 ~ 56572957 (+) |
| LOC110532427 | LOC106572343 | other | upstream | 744391 | 56125754 ~ 56132936 (+) |
| LOC110532426 | NA | other | upstream | 753142 | 56119005 ~ 56124213 (+) |
| G821409 | pacsin1 | other | upstream | 813672 | 56061706 ~ 56063655 (+) |
| LOC110532462 | LOC106572392 | other | downstream | 464610 | 57342345 ~ 57958962 (+) |
| G823373 | NA | other | downstream | 1150828 | 58028619 ~ 58028857 (+) |
| G823467 | NA | other | downstream | 1327472 | 58205263 ~ 58244984 (+) |
| G823459 | LOC106572386 | other | downstream | 1369323 | 58216176 ~ 58250307 (+) |
| LOC110532478 | LOC106572378 | other | downstream | 1510880 | 58385510 ~ 58390570 (+) |
