XLOC_027218 (tspan33a)


Basic Information

Item Value
gene id XLOC_027218
gene name tspan33a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14957360 ~ 14968641 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053621
GGAAAGGAAACGCCCACTGGTGCTTCAGTTGCTCATGCGACGCGTGTTCCATTTCTCGAGTTCAGTGACTGCGCTTATCAGGAAatgccacataaaacaacaagcACCGATTCCGCAAGATGCGCTCCTGACATTTTGCTCAAACATCGAGAGACCTCGAGTTGATTCACCAGGATGGAAATCTAGATAAAGTTAAATGAACGCTAAAGGTCTGGTGCGAGGCATCACACACCTTTAATCATGGGAAACGCAAAAAGAGCAACGCAAAACGACGAGGACTACACTTTCGTCAGTCCAgtagtcaaatatttactgttCTTCTTCAACATGATATTTTGGATAATCTCACTGGTCCTGATATCTATTGGTGTTTATTCCAGGATAGTTAAACATGAAACAGCGCTGGCCTGTCTAACTGTGGATCCAGCTCTGATACTGATGGTAGTGGGAATTCTCATGTTCTTCATCACTTTCTGTGGCTGTGTGGGTTCTCTGAGGGAGAACATATGCTTACTGCAGACGTTCTGCATCTTCTTGACTATCATGTTTCTGCTGCAGCTTCTGGCTGGTGTTCTAGGATTTGTCTTCTCAGATAAGGCACGTGGCAAAGTAACGGATATGTTTGATAATGCCATCAAGCATTACAGAGACGATTTAGACCTACAGAACCTTATCGACTATGGACAAAAACAGTTTAACTGCTGCGGGGGGATTTCTTTCATGGATTGGTCAAAGAACATGTATTTCAATTGTTCAGACGACAATCCAAGCAGAGAGCGCTGTTCTGTACCCTTCTCCTGTTGTCTGCACGCCAAAGAGGAGACTATAATAAACACCATGTGTGGTCATGGCATGCAGGCGCTGAATTATCTGGCAGCCAGTGCCTTCATCAATACCAACGGCTGCATTGATATACTGGTCAACTGGATCCACAGTAACCTGTTTCTACTGGGAGGCATCGCACTAGGTCTCACCATACCCCAGCTGGTTGGAATCCTTCTCTCTCAGGTGCTTATTAATCAAATCCAAGATCAAATTAAACTACAGAATTACAACCAACAACATCGCTCAGACCCCTGGAGCTGAAAGAGAAAAGGAAAATCTGGGGGAAAAAAAGGATTTTGAGTGATGTTTTAAGATCATGTTTTTGATATTTTACAAATCTGAATATCTGTATGAATTGTAGCAAGACAT
>TCONS_00053622
GAGTTCAGTGACTGCGCTTATCAGGAAatgccacataaaacaacaagcACCGATTCCGCAAGATGCGCTCCTGACATTTTGCTCAAACATCGAGAGACCTCGAGTTGATTCACCAGGATGGAAATCTAGATAAAGTTAAATGAACGCTAAAGGTCTGGTGCGAGGCATCACACACCTTTAATCATGGGAAACGCAAAAAGAGCAACGCAAAACGACGAGGACTACACTTTCGTCAGTCCAgtagtcaaatatttactgttCTTCTTCAACATGATATTTTGGAAACAGCGCTGGCCTGTCTAACTGTGGATCCAGCTCTGATACTGATGGTAGTGGGAATTCTCATGTTCTTCATCACTTTCTGTGGCTGTGTGGGTTCTCTGAGGGAGAACATATGCTTACTGCAGACGTTCTGCATCTTCTTGACTATCATGTTTCTGCTGCAGCTTCTGGCTGGTGTTCTAGGATTTGTCTTCTCAGATAAGGCACGTGGCAAAGTAACGGATATGTTTGATAATGCCATCAAGCATTACAGAGACGATTTAGACCTACAGAACCTTATCGACTATGGACAAAAACAGTTTAACTGCTGCGGGGGGATTTCTTTCATGGATTGGTCAAAGAACATGTATTTCAATTGTTCAGACGACAATCCAAGCAGAGAGCGCTGTTCTGTACCCTTCTCCTGTTGTCTGCACGCCAAAGAGGAGACTATAATAAACACCATGTGTGGTCATGGCATGCAGGCGCTGAATTATCTGGCAGCCAGTGCCTTCATCAATACCAACGGCTGCATTGATATACTGGTCAACTGGATCCACAGTAACCTGTTTCTACTGGGAGGCATCGCACTAGGTCTCACCATACCCCAGCTGGTTGGAATCCTTCTCTCTCAGGTGCTTATTAATCAAATCCAAGATCAAATTAAACTACAGAATTACAACCAACAACATCGCTCAGACCCCTGGAGCTGAAAGAGAAAAGGAAAATCTGGGGGAAAAAAAGGATTTTGAGTGATGTTTTAAGATCATGTTTTTGATATTTTACAAATCTGAATATCTGTATGAATTGTAGCAAGACATGCTGATGATCAATAGGTCAATACATCTATTTTGGGATTGAAAACTGATTTTCAGTCTTGTGGTGTAAACTagtttatatgatatttattaaatTGCACTGCATATTTTAAAAGCAGACTTTGTATTTGGTCGATATGTCATCTGAGAacaaaaattattgtattattatttaccaATATAATGTgtgtaaaacattcattttaatagGTCAGGTATGCTtcctataaattttttttatttaacataattttgTAATTCAAGTATTATTGactattactttaaaaaaatgtattcaataagCACTTTTATAACATTACTAGTTGATCATATTAGTTTTGCTgatgatttttttcaaaatgggTTCCTACATCAACAACATTTCTGATTATAATCTGAATAAACACTGCAAGCTTGATCTGGCCAGAGAATCAAGTGTTTACTCTCCTCTTCATAATCTGGCAGTATAGTGAGTGTCTTCCTTCTGTTTGGAGAACAGAACGTTCATTCAGTGGATCccaatgttttgttgtttgttgtaaatataaataaaatattttgaagatatAAA
>TCONS_00053623
GATTCCGCAAGATGCGCTCCTGACATTTTGCTCAAACATCGAGAGACCTCGAGTTGATTCACCAGGATGGAAATCTAGATAAAGTTAAATGAACGCTAAAGGTCTGGTGCGAGGCATCACACACCTTTAATCATGGGAAACGCAAAAAGAGCAACGCAAAACGACGAGGACTACACTTTCGTCAGTCCAgtagtcaaatatttactgttCTTCTTCAACATGATATTTTGGAAACAGCGCTGGCCTGTCTAACTGTGGATCCAGCTCTGATACTGATGGTAGTGGGAATTCTCATGTTCTTCATCACTTTCTGTGGCTGTGTGGGTTCTCTGAGGGAGAACATATGCTTACTGCAGACGTTCTGCATCTTCTTGACTATCATGTTTCTGCTGCAGCTTCTGGCTGGTGTTCTAGGATTTGTCTTCTCAGATAAGGCACGTGGCAAAGTAACGGATATGTTTGATAATGCCATCAAGCATTACAGAGACGATTTAGACCTACAGAACCTTATCGACTATGGACAAAAACAGTTTAACTGCTGCGGGGGGATTTCTTTCATGGATTGGTCAAAGAACATGTATTTCAATTGTTCAGACGACAATCCAAGCAGAGAGCGCTGTTCTGTACCCTTCTCCTGTTGTCTGCACGCCAAAGAGGAGACTATAATAAACACCATGTGTGGTCATGGCATGCAGGCGCTGAATTATCTGGCAGCCAGTGCCTTCATCAATACCAACGGCTGCATTGATATACTG

Function

symbol description
tspan33a Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN33 (tetraspanin 33).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0051604 protein maturation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-361 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN33 (tetraspanin 33).

Ensembl:

ensembl_id ENSDARG00000004497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053621 False 1194 mRNA 0.43 8 14957360 14968073
TCONS_00053622 False 1650 mRNA 0.38 7 14957417 14968641
TCONS_00053623 True 755 mRNA 0.44 6 14957468 14967633

Neighbor

gene id symbol gene type direction distance location
XLOC_027217 psmc2 coding upstream 25001 14926948 ~ 14932359 (+)
XLOC_027216 akr1b1.1 coding upstream 46974 14899720 ~ 14910386 (+)
XLOC_027215 shisal1a coding upstream 93850 14826299 ~ 14863510 (+)
XLOC_027214 NA coding upstream 186775 14767982 ~ 14770585 (+)
XLOC_027212 cmasa coding upstream 220258 14727018 ~ 14737102 (+)
XLOC_027219 smo coding downstream 2598 14971239 ~ 14979937 (+)
XLOC_027220 cax1 coding downstream 13213 14981854 ~ 14990926 (+)
XLOC_027221 zc3hc1 coding downstream 37576 15006217 ~ 15010891 (+)
XLOC_027222 ube2h coding downstream 42700 15011341 ~ 15059876 (+)
XLOC_027223 NA coding downstream 102833 15071474 ~ 15076052 (+)
XLOC_027213 BX571719.4 non-coding upstream 224237 14732983 ~ 14733123 (+)
XLOC_027211 BX571719.2 non-coding upstream 232146 14725074 ~ 14725214 (+)
XLOC_027208 BX571705.1 non-coding upstream 549062 14399472 ~ 14408298 (+)
XLOC_027205 NA non-coding upstream 768631 14185166 ~ 14188729 (+)
XLOC_027224 NA non-coding downstream 136053 15104694 ~ 15114467 (+)
XLOC_027225 NA non-coding downstream 214864 15183505 ~ 15240713 (+)
XLOC_027228 NA non-coding downstream 900571 15869212 ~ 15881144 (+)
XLOC_027235 CR749763.5 non-coding downstream 1032597 16001238 ~ 16004425 (+)

Expression


Co-expression Network