G822474 (LOC106572415)


Basic Information

Item Value
gene id G822474
gene name LOC106572415
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56878383 ~ 56878743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU935171
CTCCATGGTGTTACTACCATTCATTACTGAAATACACATGGCTTTGAAGTAGAAGTAATCGAAAATTGGCAGATATTATGGTGTGAAAAGCACACTGAATTTACACACACTGCATTGTAGCTCGGCATCTATGGCCATGTTACGTTTTGTGTTACCTCTTTCTCACAGTTGATGTTGAGGGTGAGTAAGGCCATGGGGCTGTTGGGGGCACTGTTTCCCGGCCCCAGAGCCAAGCCCTTGTGGTCAGAGGACTGGTTGGGGCAGGGCAGGGAGCCAAGCTTGCCCAGGTAGCGCTTCACCTGCTGCTGCTGGGCCTGCTGGATGTGGTACTTGGTGGGGTTCTCCAGGTGAGTCTGCACct

Function

NR:

description
microphthalmia-associated transcription factor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU935171 True 361 lncRNA 0.52 1 56878383 56878743

Neighbor

gene id symbol gene type direction distance location
LOC110532441 LOC106572418 coding upstream 14506 56839717 ~ 56863877 (+)
LOC110532442 eif4e3 coding upstream 38757 56830744 ~ 56839626 (+)
LOC110532437 LOC106572423 coding upstream 170056 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 226299 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 236400 56590691 ~ 56641983 (+)
LOC110532445 LOC106572414 coding downstream 35839 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 68735 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 70061 56948804 ~ 56950054 (+)
LOC110531215 uba3 coding downstream 80305 56959048 ~ 56979903 (+)
nfascb LOC106572405 coding downstream 241443 57120186 ~ 57136910 (+)
G822473 NA non-coding upstream 592 56877327 ~ 56877791 (+)
G822471 NA non-coding upstream 5666 56872385 ~ 56872717 (+)
G822470 NA non-coding upstream 6951 56870079 ~ 56871432 (+)
G822438 NA non-coding upstream 69839 56806388 ~ 56808544 (+)
G822436 NA non-coding upstream 73059 56805114 ~ 56805324 (+)
G822481 NA non-coding downstream 12257 56891000 ~ 56891203 (+)
G822482 NA non-coding downstream 12971 56891714 ~ 56891979 (+)
G822483 LOC106572415 non-coding downstream 13948 56892691 ~ 56907208 (+)
G822463 NA non-coding downstream 65553 56944296 ~ 56944813 (+)
G822870 LOC106572406 non-coding downstream 215695 57094438 ~ 57094913 (+)
G822404 NA other upstream 114843 56762625 ~ 56763540 (+)
G822283 NA other upstream 305426 56572607 ~ 56572957 (+)
LOC110532427 LOC106572343 other upstream 745447 56125754 ~ 56132936 (+)
LOC110532426 NA other upstream 754198 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 814728 56061706 ~ 56063655 (+)
LOC110532462 LOC106572392 other downstream 463658 57342345 ~ 57958962 (+)
G823373 NA other downstream 1149876 58028619 ~ 58028857 (+)
G823467 NA other downstream 1326520 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1368371 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1509928 58385510 ~ 58390570 (+)

Expression


Co-expression Network