XLOC_027220 (cax1)


Basic Information

Item Value
gene id XLOC_027220
gene name cax1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14981854 ~ 14990926 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053625
GGCTGATGGTGGAGGCGCGCGCCTGAAGCAGGAGGATCAGTATGGCTCAAATCAAACCCACGATGTCCGTTGATGTGGAGAGTCGGAGGCGACGGTCCACCGAGAGCTCAGAGCCCTTCTTGGACCATGACCCTAAAGGTCGCCGCTGTAGCTCCCAATGTGACAGACTGTGTGTAGCCGGAGCATATCATGAGATCCCAGATACTCCTTCACCCTGCACATCCCAGTATTTCGGACATTACACTCCGAAATGCCTCTCTGCCCACAGGCATTCCATGCATGCACGATGCCCAGAAGACATTTGGCAGGAGGCGAGCATCAGAACCTCTATCCGAGCAGAAAATGAGGTGGAGGCACACAAAGTTGCCAACAACTACAAGTTTGGTTTCAGGAAATGGAAGAGTCATGTAACTGAGCGACCAATCGAGGACCGGTCTGATGTAGTTAAGGAGCTTTATTCTGAGCTCAACTATGTCAAACAACTTTCAGGATCTCTGGTCACTGCTGGAAATATAGTATATGTGTTGCTATTTGGGTGGTGGATctccttgttttattttttggttggTTTGCTGATGTTTTTCACCATCGCTGGCATCCCATATGgaAAGCTTTGTTTGCAGCTGTCAGGGTATTTCATATGGCCATTTGGAAAAGCATTGCAGAAAAGCAGCAGTCTGGTTAAGAGATGTTGTGTGAAATTCCCCCACTGTGAGGCTATTCCAGAGGAGGTGGACGAGGTGAAGGAGCCTTTAAAAGAGTCCACACCTCTGCTGCACTCCGGTCCTGCTGTCACTGCTGAAATCCCTGTGCCTGCACCACCCACCAAGCCCACACGTTACTGGTGTCGATTAAGTACATATGTTTGGCTGATACTGGGTTACCCTCTGCTGGCTGTGGTTCATTGCCTGGCCATGTTCCTGTCCTGGATGATGGTGTTCACCATCCCTGTGTCAAAGATGAACGCCAGGACCTTGAGCCTCATCCTGCTCATGCCACCAGAACAGGTCAAAGTTCGCAATGTGAAAAAGCCACAAGGCTGTGAGACCAGAGTCCTGCTTTGCTGTTACCGAGCCTTCAACTGGTACTATTACAAATACACTGTGGATGGGATCAATGTGTTTGCTGTTAACCTGTTGCCGCTGGTTATCATCACTCTAATAATCGGCTATATGGACAGAGAGAATTACTTTGTGAGCTCAGAAGTAAAGTTTGCCACAGCATTGATCTCCATTATCCCATTGTCCTACTACATCGGGATGGGAATAGCAAGTATTTCCGCACAGAGTAACTTTGCTGTGGGAGCGGTAGTAAACGCCACGTTCGGCTCCATTACAGAGATGGCCTTCTACATCACAGCTTTACTCCAGGGTCAGCGTGCGGGATCCCAGTGTTATGCAGAACTTGTCAAATCTGCTCTCACAGGCACCCTGCTGGGCTGTATCCTCTTCATACCGggGCTCTGTATGATCATTGGCGGCTTTAAACACAGCGAGCAGCGGTTCAACAGCAGGTCAGCAGGTGTCAGTTCAGCACTGCTCTTCATATCAGTAGGAGGTGTTTTCGCCCCCACGCTCTTTTCGAAGGCTTATGGAAATTTTATATGCGAGGGCTGCAACAACCCTCCTGGTAACATCTCAAAGCCCTTCATATGCAACAACTGCCACTACGACCTGAGTGAAAACAACCGACCTCTGTTTTTGAGTCACATCGAGCCTTTAGTGTACACCGTCTCTGTCCTGTTGCCTGCTGCGTATCTGGTTGGTCTGATCTTCACCCTCAAGACTCATTCGCACATTTATGACATCCACATCAGCGATGGCCACTGTCACGTTATTAGTGATCATCACGCAGTGGCTCACTGGTCGAGGACGAGAGCTTTAGTGGTGCTCATTTTGGCTACTATATTGATGGCTGCTTGTGCTGATCTGAGCACCGAACATATCAAGCCTATCATATCCAACTCCAGCGTCTCACAGTATTTTATTGGCGTTACTATAATAGCCATGGTTCCTGAGCTTCCTGAGATAGTCAATGGCGTCCAGTTTGcgcttcaaaacaacatcagtcTCAGTCTGGAGGTGGGGAGTTGTTTAGCAGTTCAGGTGTGCATGCTGCAGATCCCTCTACTCATCTTGTTCAATGCTTTTTACGATGTTGGATTCGTTCTCATATTCAGCGATTTGCACCTCTGGGCAAGCATCTTCAGCGTTATCCTGGTAAACTACATATTTATGGATGGAAAGTCAGACTATTTCCAAGGAACGGCTCTGGTGGTTGTTTACCTCATTCTCCTGGCTTTATATTTTTTCGCACCTGCTCCTCTTGGATGttgaacttcttttttttttttctccaataatattttattgttgaaATGTTTGTCTTTTGTATAAGAATGTTTTCCCAAAGAATAGAAATCAATTCTTTCCTAGTGTGTGTCTAAAGCTGAAAACAGTTTCACAGTGTTTACTTGAATAAAATATGCACTAAAAATGAATTCAcgaaaaaatctatatatttagcTACCCAtcatgatttaaaaaatgaataaataaattttgtattCCTATGATGCTACCTGTGTGATTTAATCCAAGTTAGAACGCA

Function

symbol description
cax1 Predicted to enable calcium:proton antiporter activity. Acts upstream of or within calcium ion transport and neural crest cell development. Located in endomembrane system. Is expressed in neural crest cell.

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015369 calcium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3044 Predicted to enable calcium:proton antiporter activity. Acts upstream of or within calcium ion transport and neural crest cell development. Located in endomembrane system. Is expressed in neural crest cell.

Ensembl:

ensembl_id ENSDARG00000045601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053625 True 2610 mRNA 0.46 20 14981854 14990926

Neighbor

gene id symbol gene type direction distance location
XLOC_027219 smo coding upstream 1917 14971239 ~ 14979937 (+)
XLOC_027218 tspan33a coding upstream 13213 14957360 ~ 14968641 (+)
XLOC_027217 psmc2 coding upstream 49495 14926948 ~ 14932359 (+)
XLOC_027216 akr1b1.1 coding upstream 71468 14899720 ~ 14910386 (+)
XLOC_027215 shisal1a coding upstream 118344 14826299 ~ 14863510 (+)
XLOC_027221 zc3hc1 coding downstream 15291 15006217 ~ 15010891 (+)
XLOC_027222 ube2h coding downstream 20415 15011341 ~ 15059876 (+)
XLOC_027223 NA coding downstream 80548 15071474 ~ 15076052 (+)
XLOC_027224 NA coding downstream 113768 15104694 ~ 15114467 (+)
XLOC_027225 NA coding downstream 192579 15183505 ~ 15240713 (+)
XLOC_027214 NA non-coding upstream 211269 14767982 ~ 14770585 (+)
XLOC_027213 BX571719.4 non-coding upstream 248731 14732983 ~ 14733123 (+)
XLOC_027211 BX571719.2 non-coding upstream 256640 14725074 ~ 14725214 (+)
XLOC_027208 BX571705.1 non-coding upstream 573556 14399472 ~ 14408298 (+)
XLOC_027205 NA non-coding upstream 793125 14185166 ~ 14188729 (+)
XLOC_027228 NA non-coding downstream 878286 15869212 ~ 15881144 (+)
XLOC_027235 CR749763.5 non-coding downstream 1010312 16001238 ~ 16004425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_03350468_03358669 CAX1 coding CI01000020 null 3350453 ~ 3358669 (-)
bowfin (Amia calva) AMCG00006533 NA coding CM030134.1 CM030134.1 7967991 ~ 7981094 (+)