XLOC_027223


Basic Information

Item Value
gene id XLOC_027223
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15071474 ~ 15076052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057674
ATTGGGATTCTGGGATGAACGCATCAGTAGGAAGAAGGGTTCTTCTCAACCTCCTTAACCAAATCTCCCTCCCACCTGTACGCTCCCCCATTCCCTACTGTTCTGTCGTTCTTTCATTGCTATTGCCGGAGTCTTAAAGGGTGAAGCTGACAGACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAAAGCACACTATCAGTGAATTACCAAAGGGCCATAAACAGAGCAGAGAAAGAACCACGTGTTTGATTTGCTCTCTGGTGTATGGGAACAGATTCACAACTCTTGGTCGAGCTGGGCGCTCTTCTTTGCCTGTTTTGGCACTAGcacatttttgcttttttatatataccTTGAGCAATTATGTGTAGTGCCAATATGGGACAAGACAGACatgctacttaaaaaaaaaatcagccaatCGCAAAGGACAGACAGCAGGCCGTCGGCGCGATTGATCCTCTCTGAGGCACTCATGTTCTATTTTGAGTCCTTCTGCCCAGTGTAACATAAGAAGCGACCTTTACTGCGGAAAGCTGAAAATTCAATAAGCTTGGATCTTCGGGAACACATTTTCCTTTCAGTCACTGCAGTCGAACCCCAAAAGAAGTTGATTCTACCCAGAGATGATTTGCTCAGATACATTATGGCCTTTAAATGGTGTATCTGCATCATCAGATGCCATGAACAGCCATTACTGGTGGACACTCAAATATTCAAGTCCTCTTGAAAGCAACTGCACCTTTGTCAATCAATGCACTAGATGTGCTTTCGGTagcatatttttgttgttgttgttgtacttcTGTGCAGTGCTACAGCTGTGGAATAAAAAGATATTCAGATCAGTCCTTCATTTAAGGGACCATTTCATGACTTCATTCATAAGAATAAAAGCATTGGTGgttattggcattgatggttTCATAAAGAATCTTTAGGATCTATAGAAACGTCCCATTGTCTTTTGTTAGCGAAACTGCTCAAAAATCGACTGACAAAAATACCTTAAGTAAAACTTGTTTTGGGTAAACCTAAATAAGGTTTGCCCAAAAATACGTTGCTTAGAACATCAAGTTACACATGGCACTGAATAAGGGCTATTGTTCTTGATTAATTGTCTTATTTCAATTTAAAGTATCTTTAGTTTAGGAAAAAGTTTAGTATCATTCAGTATGTCCGATGTCTCAATGAATGGCCCATTTCTTCCCCTACTATTTCAAGGACAAAAGGTTCTCTGATGGTATTTGGCAATGGTAGAACTCACACTGGTGAGGTAGTCAGATCCGGTGGTTCTAGACTTGCCAACTACTACCTGAGAACAACTCCACTGTAAGGCATGGATATAAACAAATATAGACAAAGAACTCAGAGCATAATTTCGAATATCAAGGTTGTTTCAATGATGTCACAAGCTCCGCCCCCTGAGCGAGTGACTGTGAGTAGTGCAGGTTGGGCTGAAATTCAAATATTCCCCCTGCACACTACAGTCTCAAAGCTCCCAATGCTCCAGCCATTGATCCGAGTGGTTCACTGACACTAGTCGGCCATGTTGCTTTTCATTCCAGTGCCATTGTGAGTCCTAATGTGTTCGATTAATCATATTAGGCTGATTTCTCTTTTAATGGATG
>TCONS_00053629
GACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAAAGCACACTATCAGTGAATTACCAAAGGGCCATAAACAGAGCAGAGAAAGAACCACG
>TCONS_00053630
GCTGGGCGCTCTTCTTTGCCTGTTTTGGCACTAGcacatttttgcttttttatatataccTTGAGCAATTATGTGTAGTGCCAATATGGGACAAGACAGACatgctactt
>TCONS_00053631
GTATTTGGCAATGGTAGAACTCACACTGGTGAGGTAGTCAGATCCGGTGGTTCTAGACTTGCCAACTA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080467 ENSDARG00000081095 ENSDARG00000083126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057674 False 1639 lncRNA 0.41 2 15071474 15076052
TCONS_00053629 False 98 miRNA 0.45 1 15074566 15074663
TCONS_00053630 False 110 miRNA 0.41 1 15074715 15074824
TCONS_00053631 True 68 miRNA 0.47 1 15075665 15075732

Neighbor

gene id symbol gene type direction distance location
XLOC_027222 ube2h coding upstream 11598 15011341 ~ 15059876 (+)
XLOC_027221 zc3hc1 coding upstream 60583 15006217 ~ 15010891 (+)
XLOC_027220 cax1 coding upstream 80548 14981854 ~ 14990926 (+)
XLOC_027219 smo coding upstream 91537 14971239 ~ 14979937 (+)
XLOC_027218 tspan33a coding upstream 102833 14957360 ~ 14968641 (+)
XLOC_027224 NA coding downstream 28642 15104694 ~ 15114467 (+)
XLOC_027225 NA coding downstream 107453 15183505 ~ 15240713 (+)
XLOC_027226 exoc4 coding downstream 529792 15605844 ~ 15816540 (+)
XLOC_027227 lrguk coding downstream 743676 15819728 ~ 15840799 (+)
XLOC_027228 NA coding downstream 793160 15869212 ~ 15881144 (+)
XLOC_027214 NA non-coding upstream 300889 14767982 ~ 14770585 (+)
XLOC_027213 BX571719.4 non-coding upstream 338351 14732983 ~ 14733123 (+)
XLOC_027211 BX571719.2 non-coding upstream 346260 14725074 ~ 14725214 (+)
XLOC_027208 BX571705.1 non-coding upstream 663176 14399472 ~ 14408298 (+)
XLOC_027205 NA non-coding upstream 882745 14185166 ~ 14188729 (+)
XLOC_027235 CR749763.5 non-coding downstream 925186 16001238 ~ 16004425 (+)
XLOC_027236 NA non-coding downstream 932171 16008223 ~ 16023375 (+)

Expression


Co-expression Network