G823496 (LOC106567247)


Basic Information

Item Value
gene id G823496
gene name LOC106567247
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58337743 ~ 58338492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU936298
GTGCCCAGGAAGAGCACCTCGTATCGGCCGTCTACGGCGTCCACCTGGTCCACCACCAGGGCTGTGAAGCGGTAGTCCACACCAGTCCTCACCACCAGGGGGCGACGGTGGATAGGGTACACAGGGTGGTACATGAGGGGATGGGCTCGCATAAAGTTCACTGCCTCGTCTGAGAAGTCCTTAGAGGTACGAATACCTGGAGTAAATGTTCCTCCTGGACACTAGGGGGAGTAAGAGAGGGGTTGTATATTTTTGAGTaacaaaaagagaaagagagggagagaaggggttgACAGAAGAAGGTCAGCCATGGCTGGAGGCGTACAGagtagagggggaggaaagagaagtgtactgggagagagagagagagagcgagagagagagagagcgagagagagagagagaatttgtgTATAATGTATTGATTGGTTGCAGTGAGTAACAGGTCTAAACATACTGTGCCAGGGCGAGGGTAGGGAATCTTGCCCGTGTAAACTGTCCACTGGTAGTTATGACCATGTTTGTGGGAGAAGGGTCCATTGAAGACGTTGCGGATGTCAGCCATGGAGTACACGCAGACTGCTGAACCCTTGAACACAGAGctgggagagaaagaagggagaaagagagaatgaggaatCCAGTAAGCATCAACCAGGGaagtggaggaaagaggagagaggtaaacCTACAGCTGCTATATGAAAGTACAAAACCACGAAGCAGTGACAGCAGGAAGGGTATAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU936298 True 750 lncRNA 0.51 1 58337743 58338492

Neighbor

gene id symbol gene type direction distance location
LOC110532474 LOC106572383 coding upstream 6180 58321601 ~ 58331563 (+)
LOC110532471 LOC106572384 coding upstream 16393 58298773 ~ 58321350 (+)
apex2 apex2 coding upstream 47615 58286445 ~ 58290128 (+)
LOC110532463 LOC106572391 coding upstream 317151 57984189 ~ 58020592 (+)
LOC118966205 NA coding upstream 974257 57363432 ~ 57363486 (+)
LOC110532475 LOC106572379 coding downstream 22281 58360773 ~ 58382911 (+)
LOC110532478 LOC106572378 coding downstream 47018 58385510 ~ 58390570 (+)
LOC110532483 NA coding downstream 67653 58406145 ~ 58407959 (+)
LOC110532485 NA coding downstream 94629 58433121 ~ 58447861 (+)
LOC110532488 LOC106572433 coding downstream 109439 58447931 ~ 58496358 (+)
G823551 NA non-coding upstream 1038 58336441 ~ 58336705 (+)
G823549 NA non-coding upstream 2832 58334651 ~ 58334911 (+)
G823459 LOC106572386 non-coding upstream 87436 58216176 ~ 58250307 (+)
G823347 NA non-coding upstream 218977 58116974 ~ 58118766 (+)
G823409 NA non-coding upstream 243463 58093184 ~ 58094280 (+)
G823552 NA non-coding downstream 2 58338494 ~ 58340182 (+)
G823554 NA non-coding downstream 2911 58341403 ~ 58346542 (+)
G823556 NA non-coding downstream 9096 58347588 ~ 58347939 (+)
G823498 NA non-coding downstream 52357 58390849 ~ 58391743 (+)
G823467 NA other upstream 92759 58205263 ~ 58244984 (+)
G823373 NA other upstream 308886 58028619 ~ 58028857 (+)
LOC110532462 LOC106572392 other upstream 422209 57342345 ~ 57958962 (+)
G822404 NA other upstream 1574203 56762625 ~ 56763540 (+)
G823580 LOC106567312 other downstream 180727 58519219 ~ 58535643 (+)
LOC110532492 LOC106572441 other downstream 329662 58668090 ~ 58671251 (+)
LOC110531219 LOC106572493 other downstream 345657 58684149 ~ 58720758 (+)
fkb1a fkb1a other downstream 516353 58854845 ~ 58856718 (+)

Expression


Co-expression Network