Fish Transcriptome and Expression Database

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model fish

XLOC_027224

Basic Information

Item	Value
gene id	XLOC_027224
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	15104694 ~ 15114467 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057675
ccACTATAGTAATCTCTTGTGGCTCACTGGGGTTCCTGAGCCAAAGTTTGAAAACAGGACACGCGTGATGGAAAGGGCAAAGACGCAATTGGATTCGCATGCTTTGAGTTATCTATAAAAAAAACTTGAGTTTGAATGTCCTCTTGAAGTTGGATCAGTGCAGTTCTGCAAGGATGAACAAATGAAGCAGGAGACGAGTTCTGCATACTGACTATGACTTGAGCAG

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00057675	True	226	lncRNA	0.43	3	15104694	15114467

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_027223	NA	coding	upstream	28642	15071474 ~ 15076052 (+)
XLOC_027222	ube2h	coding	upstream	44818	15011341 ~ 15059876 (+)
XLOC_027221	zc3hc1	coding	upstream	93803	15006217 ~ 15010891 (+)
XLOC_027220	cax1	coding	upstream	113768	14981854 ~ 14990926 (+)
XLOC_027219	smo	coding	upstream	124757	14971239 ~ 14979937 (+)
XLOC_027225	NA	coding	downstream	69038	15183505 ~ 15240713 (+)
XLOC_027226	exoc4	coding	downstream	491377	15605844 ~ 15816540 (+)
XLOC_027227	lrguk	coding	downstream	705261	15819728 ~ 15840799 (+)
XLOC_027228	NA	coding	downstream	754745	15869212 ~ 15881144 (+)
XLOC_027229	col7a1l	coding	downstream	774970	15889437 ~ 15966260 (+)
XLOC_027214	NA	non-coding	upstream	334109	14767982 ~ 14770585 (+)
XLOC_027213	BX571719.4	non-coding	upstream	371571	14732983 ~ 14733123 (+)
XLOC_027211	BX571719.2	non-coding	upstream	379480	14725074 ~ 14725214 (+)
XLOC_027208	BX571705.1	non-coding	upstream	696396	14399472 ~ 14408298 (+)
XLOC_027235	CR749763.5	non-coding	downstream	886771	16001238 ~ 16004425 (+)
XLOC_027236	NA	non-coding	downstream	893756	16008223 ~ 16023375 (+)
XLOC_027237	NA	non-coding	downstream	922701	16037168 ~ 16073706 (+)

Expression

Co-expression Network