G823552


Basic Information

Item Value
gene id G823552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58338494 ~ 58340182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU936357
AGAAGGGGAATGGAGAAAGGGGAAGTATAAAAGGTGATGTAAGAAGGATATAATGGTGACCTTACCCAGCAGTAGTGAACAGGGCATAGATCACAGGGTTGCGTTCATCTTGCGTGGGCTGGATGAAAACATCCCCTGGAAGACAGAAAATTACCTTCCTGCAGATGAGAGACTCAGACCCATAGACTAATAATAACTAATGATCTAGTAAATCTTTCATTGAGGTCTGTCTCACTCAGTTCATCAAATGAGGtctccaccccatcctctccGATCACAGAGCAGATGAGGCGGGCTTTCAGGAAGCTGGTCCATCTGTTGACCAGGGACTTCTGACCCCCTTTGTCATCCTgggatgagggaagagaaggaaaggaagtaACATAAAAGTGAGACACACTCGTCCCACTCTGGCCAGGACACTGGGGCTGGACCCTCCCCCTGCATCCAAACTCTTCTCCCGGAAGAAGAAGTAGAGTTTGTCATCATTCCTCTCTGCACTGTCAGGTGTAGTAACTCACCATTGAGCCACCTGGAGTCATACTGCTCTGTCCTGACTGCTGTTCTGCCCCCCATGGTCCTGAAGAGGGCTGGGTCTGTCCCCATGAAGTCTACATGAACACCTGCATACAGATTCCCatctgcagaggagaaggagagagaggaggggagaggtggagaggagaggttaggaaGAAGTGAAAGTGAGAGGACCTGTTGTTTTTGGTTTTGGGAAGTCTACTAAGTGTATTCATAAGTGAGGTGAAATCGTACTGATAAGAGCAGCAATGTTCTCCTGGAAAGGATCATAGGAACATTTGCCCTTCCCTGATTCTAGAAATCCAGGAACCAGTCTGAACACATAATCCTGGAAAGAGAGGGACCAGAAAAGCCAGATAAGGatcaaatgtaataaaatgacaAAAGCATATAGACAAATAGAGCTCATATCTGTGGCCTAGTTTTGAGTACTAGAGTGTTTAGTAATCCGGGCTGCTGGGCCTAAATATACACAGATATGCTGCAGTTGAATGTCATTTAGAATGATTTTGGGCATATTGAACCTTTCACCTCTGCCTTCCAGCCTCTGTTGATGAAGGTGCAGATGGGTTGGTAGGCTCCGGTCCCACAGGTGTACAGGTGGGTGCGGTTCCATGGCTCTATCATACGCACAAAATTTGCACACTCACCCTGGTGTGTGTACACAGATATGGGAATGTTATCAATTGTTGTTGAATGAAAAAAAACAAGGCTATCTCTTTCAAAACTGTGAAATAGACCCATGAAAGTGGGACATCATTAGTTCATCCTGTAAGGAGAGAGGCCAG
>TU936358
AGAAGGGGAATGGAGAAAGGGGAAGTATAAAAGGTGATGTAAGAAGGATATAATGGTGACCTTACCCAGCAGTAGTGAACAGGGCATAGATCACAGGGTTGCGTTCATCTTGCGTGGGCTGGATGAAAACATCCCCTGGAAGACAGAAAATTACCTTCCTGCAGATGAGAGACTCAGACCCATAGACTAATAATAACTAATGATCTAGTAAATCTTTCATTGAGGTCTGTCTCACTCAGTTCATCAAATGAGGtctccaccccatcctctccGATCACAGAGCAGATGAGGCGGGCTTTCAGGAAGCTGGTCCATCTGTTGACCAGGGACTTCTGACCCCCTTTGTCATCCTgggatgagggaagagaaggaaaggaagtaACATAAAAGTGAGACACACTCGTCCCACTCTGGCCAGGACACTGGGGCTGGACCCTCCCCCTGCATCCAAACTCTTCTCCCGGAAGAAGAAGTAGAGTTTGTCATCATTCCTCTCTGCACTGTCAGGTATCTGTTGAATCTGAATAAACAcaggc

Function

NR:

description
PREDICTED: semaphorin-3F-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU936357 False 1328 lncRNA 0.46 3 58338494 58340182
TU936358 True 536 lncRNA 0.48 2 58338494 58339168

Neighbor

gene id symbol gene type direction distance location
LOC110532474 LOC106572383 coding upstream 6931 58321601 ~ 58331563 (+)
LOC110532471 LOC106572384 coding upstream 17144 58298773 ~ 58321350 (+)
apex2 apex2 coding upstream 48366 58286445 ~ 58290128 (+)
LOC110532463 LOC106572391 coding upstream 317902 57984189 ~ 58020592 (+)
LOC118966205 NA coding upstream 975008 57363432 ~ 57363486 (+)
LOC110532475 LOC106572379 coding downstream 20591 58360773 ~ 58382911 (+)
LOC110532478 LOC106572378 coding downstream 45328 58385510 ~ 58390570 (+)
LOC110532483 NA coding downstream 65963 58406145 ~ 58407959 (+)
LOC110532485 NA coding downstream 92939 58433121 ~ 58447861 (+)
LOC110532488 LOC106572433 coding downstream 107749 58447931 ~ 58496358 (+)
G823496 LOC106567247 non-coding upstream 2 58337743 ~ 58338492 (+)
G823551 NA non-coding upstream 1789 58336441 ~ 58336705 (+)
G823549 NA non-coding upstream 3583 58334651 ~ 58334911 (+)
G823459 LOC106572386 non-coding upstream 88187 58216176 ~ 58250307 (+)
G823347 NA non-coding upstream 219728 58116974 ~ 58118766 (+)
G823554 NA non-coding downstream 1221 58341403 ~ 58346542 (+)
G823556 NA non-coding downstream 7406 58347588 ~ 58347939 (+)
G823498 NA non-coding downstream 50667 58390849 ~ 58391743 (+)
G823569 NA non-coding downstream 70074 58410256 ~ 58413624 (+)
G823467 NA other upstream 93510 58205263 ~ 58244984 (+)
G823373 NA other upstream 309637 58028619 ~ 58028857 (+)
LOC110532462 LOC106572392 other upstream 422960 57342345 ~ 57958962 (+)
G822404 NA other upstream 1574954 56762625 ~ 56763540 (+)
G823580 LOC106567312 other downstream 179037 58519219 ~ 58535643 (+)
LOC110532492 LOC106572441 other downstream 327972 58668090 ~ 58671251 (+)
LOC110531219 LOC106572493 other downstream 343967 58684149 ~ 58720758 (+)
fkb1a fkb1a other downstream 514663 58854845 ~ 58856718 (+)

Expression


Co-expression Network