G823587 (LOC106572434)


Basic Information

Item Value
gene id G823587
gene name LOC106572434
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58537444 ~ 58538992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU936437
GgtaggggaaaagagggaatcaCTCTTACATATTTCTATATTGTTTAGGATAGCCTGGTGGTCTCCAACTCTACATAGCCATAGTAGGGCGCTCTCATATAAATTCCCATTGTTATGAGGACGTGTTACAGGAAGCCTTACCACCAGCAGGTCATTGAACAGGAAGACCTCCCGTTGGTGAACTCCTGTCCTTTGGGGTCGGTTGGGGTCAGGCACCTCATAGAGCTGACAGCAGCATACCAGCCTGCGGTGTGGCAGAGACATCacAGGCTTTTTGCCTACTATGACTCTCTCCACTGCCTGCACTTGAGACACGTGGTCATCATTGGTCCTTAGCTCCCACTTCTGGATGCGCTGGTAGATCCCAACCAACAGATCCCTGGGAATGTCCTGGCCATTGTCCACTCCTCTGAGGTTCTTGATGAAGTCCTCtatcttcatcttcctctctgcCTTAACGTTAGGGCTGTACATATCCGTGTTGAGGAGGATGATGGCGAAGGCCAGGATGAAGATGGTGTCTGGGTTCTGGAACTGGCGGACCAGCGTTGGGTTACACACACAGTACCGCTGACTGAAAGCCTCTATGAGCCTCTCTACTTTCTGGGCTTCTCCTTGAACTCTGATCTGGGCCTGGAACTTCCTCAGAGCATCGTCCAGGTCCATCCCAGAGAAATCCATCTCGTCCACCACACaactacaacacacacaggacacacagtcAACACTGTAACAGTAGCCTCCCCAaggacttttttaacccctcagACATTCCTGAActtgtgaccagaaacaagctacctGGGGGCAATATCAGAATATATTATCTAAAATCTGCAAAACTGAGATGGTTTTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU936437 True 858 lncRNA 0.49 4 58537444 58538992

Neighbor

gene id symbol gene type direction distance location
LOC110532488 LOC106572433 coding upstream 41086 58447931 ~ 58496358 (+)
LOC110532485 NA coding upstream 89583 58433121 ~ 58447861 (+)
LOC110532483 NA coding upstream 129485 58406145 ~ 58407959 (+)
LOC110532478 LOC106572378 coding upstream 148000 58385510 ~ 58390570 (+)
LOC110532475 LOC106572379 coding upstream 154533 58360773 ~ 58382911 (+)
LOC110532490 LOC106572439 coding downstream 117285 58656277 ~ 58665931 (+)
LOC110532492 LOC106572441 coding downstream 129098 58668090 ~ 58671251 (+)
LOC110532491 LOC106572442 coding downstream 132362 58671354 ~ 58674299 (+)
LOC110531219 LOC106572493 coding downstream 145278 58684149 ~ 58720758 (+)
LOC110532493 LOC106572443 coding downstream 189606 58728598 ~ 58741270 (+)
G823579 NA non-coding upstream 39606 58496752 ~ 58497838 (+)
G823600 NA non-coding upstream 95225 58442016 ~ 58442219 (+)
G823569 NA non-coding upstream 123820 58410256 ~ 58413624 (+)
G823498 NA non-coding upstream 145701 58390849 ~ 58391743 (+)
G824487 NA non-coding downstream 97581 58636573 ~ 58636827 (+)
G824495 NA non-coding downstream 102294 58641286 ~ 58641558 (+)
G824523 NA non-coding downstream 138701 58677693 ~ 58677980 (+)
G824524 NA non-coding downstream 139203 58678195 ~ 58678429 (+)
G823580 LOC106567312 other upstream 1801 58519219 ~ 58535643 (+)
G823459 LOC106572386 other upstream 287137 58216176 ~ 58250307 (+)
G823467 NA other upstream 292460 58205263 ~ 58244984 (+)
G823373 NA other upstream 508587 58028619 ~ 58028857 (+)
fkb1a fkb1a other downstream 315853 58854845 ~ 58856718 (+)
ppdpfa LOC106572462 other downstream 486208 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 619589 59158581 ~ 59161748 (+)

Expression


Co-expression Network