XLOC_027227 (lrguk)


Basic Information

Item Value
gene id XLOC_027227
gene name lrguk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15819728 ~ 15840799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053636
GGTGCGCTTGTAGAGTGGGTGCTTACAGGTTCGGCCACAGAGCTTAGAAtcattctatgctctttggtttAGCTTTTCTTGCGTCTACTATTAATAAAATGAAGTTGCTTTcacaataatgatgtcaaataatCCATCTTGGGTGTTTGTGTGAGCATGTCGGATTTCTCCGTTTGCTCTGTAACAAGCGCTTTTCTCTAGAGACAGGAGACCATAGAGACAACAGACAACCAAAACGCACAACAATGGAGATTGCTGGCGAGTTAACGGAGGATGAGGTGTTTAAATGTCTGTCCGGTCTGGGTCAGTCAGCGACAGGACTCCAGCACACCTACCTGTGTCTCTCTGCGCCAGGGCGAGACTTGAAAAATGTCTCCATTTTATGCAATTACATCTATCTACAAAAGCTCGAGCTTCCCTACAATAAAATCAAAGATCTATCGTGTGTAAGTCACATGCCATACCTCATCACCCTGGATGCTTCCCACAACCAACTCACTGATTTCTTCGGATTCCAACCACCCAAAAATCTCAAGgagGTGAATTTCTCGCACAACCAGATGACAGCAATGAAAGATCTTTCTGCATATTCCTCTTTGACCAAACTGATTCTTGACCATAATTCATTCAGTGTCATCAGGGGACTGGAAAAGTGCAAAAGGCTCTCACACCTCAGCCTGGCCCACAACAACATCTCCCGCATTAGGGGTCTGGACCATCTGCCCCTCAGAGAGCTCTGCCtgGCGGGAAATATGATCAACAAAATTGAAAACCTCCAGACTCTCCACAACCTGCAAGTTCTGGATTTGTCCTGTAACCGGATTCAAAGCCTCACGGGTCTCCAGAACCTCCGTTTCCTGGGAACAGTCAACCTTGAGAGCAATCTGATCACCGAAATAAAGGAGGCTGCACATTTGCATGACCTTATTTTGTTGAGGGAAATAAATCTCCTGAAAAACCCAGTGCAGGACCATGATGATTATAGGATAGCTGTCATCTTCCTCCTCCAGCACCTCATACTCCTTGACAAACAGACTGTAACTGCTGAAGAGAAGGTGGCTGCTGTGAACAAGTACGACCCTCCTCTTGAGGTGGTCGCAGCCAGAGACCACATGACCCACTTGGTGTACCAGCTCATGCAACCACAGGTTATTTTTGACAGTACACTCCCCAGTCTGGATGCTCCTTACCCCATGCTGGTGCTCACTGGCCCACAGGCATGCGGGAAGAGGGAACTCGCTCACAAGCTGTGCCAGGAATTTAGTGACTATTTTGCTTATGGTGCCTGCCACACCACCAGGGGGCCCTATTTTGGCGAAGAGGATGGACTTGACTATCACTTTGTCACTGAGGAAGAATTTCACAACATGATTCAAATGGGTCAGTTCATCCAGACGATGCAGTACGGTGGACATTGGTATGGTCTGTCTAGGGAATCTATTGAGCGTGTGGCTCGTGAAGGTCTGGCCTGCTGTGTGCACATGGAGCTGGAGGGAGTGTTCAGCTTGAAGAACTCGTATTTTGAGCCCCGTTACGTCTTGCTGATTCCCAGCGTTGTTGATAATTACGTCCTCTTTCTGAAAGCGAGAGGATTCTATAGCAACGCTCAGATGGAAACGGCAGTGTCCCGTATTGATTTGTATGCCAGGATCAACAGAGAAAGGCCTGGCTTCTTTGATAGCATCATCCCTTGCGACGATCGTGCTGAGGCCTACCGGAGTCTAAAACAGCTGGTGAAGGAGTATTTGGGCCTGGAGGAGCACAGTGGAGGAGGTGACAGCAGCTCAATCACACCTGACAACACCTCCACCAACACAACTGGTGAGTTACCGGCAGCCAGTGCAACAGAGTCTACCGACCTCATGGACTCCTACAGCAGAAATTACCAGAAAAAAATCCAGGCCAATATGACCCCTCAGCGGACAGAAATGGCTTCTAATCACAGACGCCTGCAGCAGATTCGGGAAGCTTTGAGCGGGAAGAGCCCCGGTGCTTATGCTGAACTGTTTCAAAGAAGTGTACCAGCAGCTCCATCATCATTAGCCTCTCAGTCCCATCCCCCAGCCGGCCCTTCATCCTCCCCAGTGCGTCCCGCTGGCCTCAGCGCCCCCAACCTCAGCGAGGACAGCAGTTCTGAGGAATCTCGTGCCAGTTCTGGCCTGTCCATGAGGAGCTCAGCGGGGGTGTTCTCAGCAGAAAGCCCGGCCCGGGGATCAGACGCTGGGTCAGGGCCCAACATAGAGCCTTTGGATATATCTATGTTAGGACAGGACCGGGACTCGCTTAGAGGTTTGACCCCTGATGCTCCTCGTCCGGCTTCTGATCGTGTCTCTCCAACACACCCTTCCTCTCCAGGACGTCCAGGTGCTAATGTTAAACCAGTCCTGCCACCCATCCCATCTGGAAGGAAGACCAATGATTCCGGCTCAAAGCAGTAACTAACAGCTAGGTTGAGGTATTAGTGCATCATGTGAGTGTTAGTGGCAGAAATGGTTTAATTAACCCCTGAAGCTTCAAGCAAGGCATTCAATAAACGACAGTGAAGAGAA

Function

symbol description
lrguk Predicted to enable guanylate kinase activity. Predicted to be active in cytosol. Orthologous to human LRGUK (leucine rich repeats and guanylate kinase domain containing).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0004385 guanylate kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-232 Predicted to enable guanylate kinase activity. Predicted to be active in cytosol. Orthologous to human LRGUK (leucine rich repeats and guanylate kinase domain containing).

Ensembl:

ensembl_id ENSDARG00000069698

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053636 True 2549 mRNA 0.50 20 15819728 15840799

Neighbor

gene id symbol gene type direction distance location
XLOC_027226 exoc4 coding upstream 3188 15605844 ~ 15816540 (+)
XLOC_027225 NA coding upstream 579015 15183505 ~ 15240713 (+)
XLOC_027224 NA coding upstream 705261 15104694 ~ 15114467 (+)
XLOC_027223 NA coding upstream 743676 15071474 ~ 15076052 (+)
XLOC_027222 ube2h coding upstream 759852 15011341 ~ 15059876 (+)
XLOC_027228 NA coding downstream 28413 15869212 ~ 15881144 (+)
XLOC_027229 col7a1l coding downstream 48638 15889437 ~ 15966260 (+)
XLOC_027230 si:dkey-117n7.2 coding downstream 101276 15942075 ~ 15943847 (+)
XLOC_027231 si:dkey-117n7.3 coding downstream 103446 15944245 ~ 15944867 (+)
XLOC_027232 si:dkey-117n7.5 coding downstream 127684 15968483 ~ 15974910 (+)
XLOC_027214 NA non-coding upstream 1049143 14767982 ~ 14770585 (+)
XLOC_027213 BX571719.4 non-coding upstream 1086605 14732983 ~ 14733123 (+)
XLOC_027235 CR749763.5 non-coding downstream 160439 16001238 ~ 16004425 (+)
XLOC_027236 NA non-coding downstream 167424 16008223 ~ 16023375 (+)
XLOC_027237 NA non-coding downstream 196369 16037168 ~ 16073706 (+)
XLOC_027238 NA non-coding downstream 349527 16190326 ~ 16211867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_02732766_02753514 NA coding CI01000020 null 2732696 ~ 2753514 (-)