XLOC_002723 (kcnip3b)


Basic Information

Item Value
gene id XLOC_002723
gene name kcnip3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20653716 ~ 20706270 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005054
AATGTCGGTTCATCTAATGAAGTACTTCCCGGATGAAGATACGAGTCCGCTgttcgtctctctctctctctctctctctctctctctctctctctctcgccatCCTATGTCACTAGAGATCGAGGGATATTCTTCTGTTTTCACATCTGTCTACAGAACCACCAAAGCAGACAGTGAATGAGAGCGAACATCTGAGGATCCCTCATTCATTCGGTCATCAAAACAGACGCCAGGAACAACATGCAGGCAGATGGACAGAAGGGCGTCGATGGAGGTCTGCTTCCTGATGCCAACGGGCGGGATGGGGACTCCAGCGGGCAGAAGGAGAGCGACGGGAAGTGGCAGAAACCACGCATCACCCGCAAATCCCTCATGAAATGCTGTCTGGTCAAATGGATCATCGCCAGTGCGGCGCCTCAGGGCTCAAGTGACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATCACCAAAGAGGAGATGTTGGCTATCATGAAGTCTATCTATGATATGATGGGCAGATACACTTCTCCTTGTGTCAAAGATGACGCTGCTTTTGAACATGTGGAGAAATTCTTCCAGaaaatggacCGAAACAGGGACGGTGTGGTGACCCTTGAGGAGTTCATCGAGACCTGTCAGAAGGACGAGAACATCATGAGCTCCATGCAGCTGTTTGAGAACGTCATCTAGAGCTCAGCATGAATGATCCTCCATCAAActctcttcacacacacacacagacacttgtGTTTTCTGTTATCTCCAGCATGTGAATGAGTCTTTTGATTGATTGTAATGAATGCTGTGCACAGTTGTCTGCGAGAGGGGATACTGCAGTATGTTGCCGTTTCGATGCTCATTTGTATATATGTAGATAATGTCTGTGCTCTTCAGTTTCTGCCTGGTTTAATGAACGTTCGCATGTTTGCCTGCTGTTTGTCTGAGCCGTTGTCATTTTGTACAAAGGAATAAAGGCAAATGTGAATGAATCCTTCATGTGTGGATGTTCTTACAGTGGTGTGTGAGATATTGATATTGATATGatattgataataatacatttgatttgaaattaaaaacaaaaagtgaaatTGAGGGCAATGCATCCCAACCTAATTATTATGTtcttatcatattttatttatttaatcacattttattgggacagacagacagacagacagacagacagacagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagagagtgagagagagaggtggGGGGCTCAAAAATTGCATTTCTTGTTTGTTCAaatgatatttatatatgtaaaattagctgaaacaatacaatttttgACTCTTGAGCTTTCCggggggacagcttaattgttttatgttcaatcaacttacatttgtaaaaaaaaataatcatttaatctaattcctttatgttgtcctaacAAATCAATTGTTACCTAATTTATGTTGTACATACACAACTTGACTGGATAGAGAAACTCACAAATttatgacgtttgctgtttgttcaaactactaaaaaatgagctgaaacaacacaatttttttttttttggggggggggggcaacttaattgttttatgttatgttCTGTTGTTTTATCAACTTCTcataaaacaatgttttgtgaAACAAATCATAAAAACTGATaagttaattccttcatgttgtcccaacacaaaacgatTGTGGAAccctagatagatagatagacagacagacagacagacagacagacagacagacagacagacagacagacagacagactgactgactgactgactgactgactgactgactgactgactgactgactgactgactgactgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgatatttttacagtatatatcaaT
>TCONS_00005055
CCAAAGCAGACAGTGAATGAGAGCGAACATCTGAGGATCCCTCATTCATTCGGTCATCAAAACAGACGCCAGGAACAACATGCAGGCAGATGGACAGAAGGGCGTCGATGGAGGTCTGCTTCCTGATGCCAACGGGCGGGATGGGGACTCCAGCGGGCAGAAGGAGAGCGACGGGAAGTGGCAGAAACCACGCATCACCCGCAAATCCCTCATGAAATGCTGTCTGGTCAAATGGATCATCGCCAGTGCGGCGCCTCAGGGCTCAAATGACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATCACCAAAGAGGAGATGTTGGCTATCATGAAGTCTATCTATGATATGATGGGCAGATACACTTCTCCTTGTGTCAAAGATGACGCTGCTTTTGAACATGTGGAGAAATTCTTCCAGaaaatggacCGAAACAGGGACGGTGTGGTGACCCTTGAGGAGTTCATCGAGACCTGTCAGAAGGACGAGAACATCATGAGCTCCATGCAGCTGTTTGAGAACGTCATCTAGAGCTCAGCATGAATGATCCTCCATCAAActctcttcacacacacacacagacacttgtGTTTTCTGTTATCTCCAGCATGTGAATGAGTCTTTTGATTGATTGTAATGAATGCTGTGCACAGTTGTCTGCGAGAGGGGATACTGCAGTATGTTGCCGTTTCGATGCTCATTTGTATATATGTAGATAATGTCTGTGCTCTTCAGTTTCTGCCTGGTTTAATGAACGTTCGCATGTTTGCCTGCTGTTTGTCTGAGCCGTTGTCATTTTGTACAAAGGAATAAAGGCAAATGTGAATGAA
>TCONS_00005056
CTCCAGGCAGATGGACAGAAGGGCGTCGATGGAGGTCTGCTTCCTGATGCCAACGGGCGGGATGGGGACTCCAGCGGGCAGAAGGAGAGCGACGGGAAGTGGCAGAAACCACGCATCACCCGCAAATCCCTCATGAAATGCTGTCTGGTCAAATGGATCATCGCCAGTGCGGCGCCTCAGGGCTCAAATGACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATCACCAAAGAGGAGATGTTGGCTATCATGAAGTCTATCTATGATATGATGGGCAGATACACTTCTCCTTGTGTCAAAGATGACGCTGCTTTTGAACATGTGGAGAAATTCTTCCAGaaaatggacCGAAACAGGGACGGTGTGGTGACCCTTGAGGAGTTCATCGAGACCTGTCAGAAGGACGAGAACATCATGAGCTCCATGCAGCTGTTTGAGAACGTCATCTAG
>TCONS_00005057
GGCAGATGGACAGAAGGGCGTCGATGGAGGTCTGCTTCCTGATGCCAACGGGCGGGATGGGGACTCCAGCGGGCAGAAGGAGAGCGACGGGAAGTGGCAGAAACCACGCATCACCCGCAAATCCCTCATGAAATGCTGTCTGGTCAAATGGATCATCGCCAGTGCGGCGCCTCAGGGCTCAAACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATCACCAAAGAGGAGATGTTGGCTATCATGAAGTCTATCTATGATATGATGGGC
>TCONS_00005058
GCAAAGCTGCCGGACGTTTCCACATGGACGTGAAGAAACTCCTCGCTTTAACCGGTTTTAGTTGTAGAAGTGTCCATTACACAGACATTAGCATCCCGTTTACAGCCGTGGTTTGTTTATAGCTGTCAATACACCTGCTAGTGTCCAGTTAACCACCGTTGGTTTGGGAATGAAGACTTTGAGAACTTGTTGCTGGAAGGAACACCGCTGATCTGGCTTTTAGCAAACATAGCATGAGCTCTTGATTTCTCTGGGTTTTGTGTATTTGACATTGGCTGTGATGGCGATTCAGGGTATGGAGTTGTTTGCGGTGGCTGTGGTGATTCTTATGTTTGTTTTGGTGCTCAAGCAGTTTGGCATGAGCGAATCGCTGGGGGACGATGACAGCACTGACAGTGAGCTGGAACTGTCCGCTGTTCGCCATCAGCCTGAGGGTCTAGAGCAGCTTCAGGCTCAGACTCAGTTCACCAGGAAGGAGCTGCAGTCGCTTTACAGAGGCTTCAAAAATGAGTGTCCCAGTGGACTGGTGGACGAGGAGACCTTCAAATCCATCTACTCCCAGTTCTTCCCTCAAGGAGATGCGACCACATATGCACATTTCCTTTTCAATGCCTTTGACATGGACAGAAATGGCTCAATACGATTTGAGGACTTTGTAATCGGCCTGTCTGTTCTGCTTCGAGGTTCGGTGACGGAGAAACTGAGATGGGCCTTCAACTTATACGACATTAACAAGGACGGCTACATC

Function

symbol description
kcnip3b Predicted to enable calcium ion binding activity. Acts upstream of or within endocrine pancreas development. Is expressed in nervous system; neural tube; pancreatic system; and trigeminal placode. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1752 Predicted to enable calcium ion binding activity. Acts upstream of or within endocrine pancreas development. Is expressed in nervous system; neural tube; pancreatic system; and trigeminal placode. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).

Ensembl:

ensembl_id ENSDARG00000017880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005054 False 2337 mRNA 0.41 9 20653716 20706270
TCONS_00005055 False 1158 mRNA 0.48 10 20654734 20706109
TCONS_00005056 False 780 mRNA 0.51 9 20655033 20696518
TCONS_00005057 False 598 processed_transcript 0.52 6 20660417 20696513
TCONS_00005058 True 748 mRNA 0.48 6 20661225 20669635

Neighbor

gene id symbol gene type direction distance location
XLOC_002722 rassf2b coding downstream 3414 20641001 ~ 20650302 (-)
XLOC_002721 sprn2 coding downstream 16618 20635960 ~ 20637098 (-)
XLOC_002720 NA coding downstream 34903 20616776 ~ 20618813 (-)
XLOC_002719 nsd3 coding downstream 64827 20543279 ~ 20588889 (-)
XLOC_002718 plpp5 coding downstream 116654 20527427 ~ 20537062 (-)
XLOC_002724 NA coding upstream 136648 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 coding upstream 202172 20908442 ~ 20908556 (-)
XLOC_002726 pcdh1a coding upstream 214094 20920364 ~ 21054059 (-)
XLOC_002727 avd coding upstream 652792 21359062 ~ 21362320 (-)
XLOC_002728 fgf18b coding upstream 765046 21471316 ~ 21484065 (-)
XLOC_002716 BX294119.1 non-coding downstream 169786 20483814 ~ 20483930 (-)
XLOC_002714 NA non-coding downstream 197709 20448639 ~ 20456007 (-)
XLOC_002710 NA non-coding downstream 416745 20234014 ~ 20236971 (-)
XLOC_002708 CR450836.1 non-coding downstream 502388 20143797 ~ 20151328 (-)
XLOC_002730 BX957322.2 non-coding upstream 863926 21570196 ~ 21573457 (-)
XLOC_002731 NA non-coding upstream 921537 21627807 ~ 21649728 (-)
XLOC_002732 NA non-coding upstream 939884 21646154 ~ 21843863 (-)

Expression


Co-expression Network