G824800 (LOC106572475)


Basic Information

Item Value
gene id G824800
gene name LOC106572475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59263049 ~ 59264785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU937845
cCACAATATAAACTGCAATGTCAAACgacccctctcccttccttcccaAAGTAACCCACCCAAGCACATATGTGGCAGTTGATAGGGTTCCTTCTGTCTGCTACATTGCTAGTCCACAACTGTAACTTACCCTACAGCATATACACTTTGTTTCTGTACATCAAACCATTGCTAAAAGCACCAACACATAGTTCAGAGGAGACCAACCCATTGAAATCAATTGAGACAAACATTATTCCTCAGATAAATAAAACAGTCTACCAAAATTGTCTGAATAATTATATTATTCAGATGCATGTACTAAGCACTGGGTTTCCTGAAAAATACAGTTCTTTCTATtacattatttatatttttttttaagggggagggggaagaaggggACCTTAACCCACATCCTCTGAGTCTCTGGTTTTGTATGCAAGGAAGTTCCAtgtacaatatactgtattataaactgggtagtttgggtcctgaatgctgattggctgagagcagtggtatatcagacaTAAAAACTgtgtggttcaagccctgaatgctgattggctgaaagccatgatATATCATACAATATACCACTGGTATGACACAAAattacttgtttactgttctagctaattacattggtaaccagtttataataccaataagacacctcaggggtttgtggtatatggccaatataccacggctaagagctgtatacaggcactccacattgcgtcatgcataagaacagcccttagccattgtatattggccatataccacaccccctttgaTCTTTACAGGGTAACTTATTGTTTGACTCCTTTGTGCCACCcaatgcaatggaaacccatgCATCACACTGatccacattctgtcacaacaaccaACAGATCAGAGGAGGAAAGAAAAAtaggtaaaatacaaaaaaagtaaCCAAGCAGTATAGTTCTGGACAACAACCCAATAAAGAGCAGATAGCACCGTTGTTACAAAGGGGATGGGGACATGAAGGGCTGGGTTGGGGTGTTAGGGCAGGGTCTGTGACACATCCTGACTTGTGTGACTGAGTTGCTAACGGAGTAAACTCCCCATCCAGTCCCTCCTCATTTCCTCAGCGACCATCGCTAattgtgcagttgtcacacacaTAGTCTTCTTTCTCAGCCAGCTCGGCTGTCACACCCACACAGACCTGGTGGAACCACTGGTTACAGCTGGCATCCCTCTGCTGGACACATCTCCTCTTCAGAGTCATCTGACTGGGAGAAGTCGGAGTGAGACGAGGAGGTCGACGCCGCCTTGCGTTCCAGGTTCTTGTCTTTGTTCATTTTCTGCCTCTTGTTCTGGAGCTTCTTAGCCTTGTCCCTGCGCTCTGGCTCTACAGCCTCCCTCTCCAGGCGTCGCTTAGCCTTCTTCTCTGCTCCGTTCACTCCTTCCTTTCTCA

Function

NR:

description
lysine-specific demethylase 5B-B-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU937845 True 1438 lncRNA 0.44 2 59263049 59264785

Neighbor

gene id symbol gene type direction distance location
LOC110531223 LOC106567210 coding upstream 72153 59188485 ~ 59190896 (+)
LOC110532519 NA coding upstream 77448 59183047 ~ 59185601 (+)
LOC118966079 NA coding upstream 101301 59158581 ~ 59161748 (+)
LOC110532516 mare3 coding upstream 126206 59132059 ~ 59136843 (+)
LOC110532515 LOC106572465 coding upstream 136074 59109495 ~ 59126975 (+)
LOC110532529 LOC106572479 coding downstream 58790 59323575 ~ 59336156 (+)
LOC110532530 LOC106572481 coding downstream 110189 59374974 ~ 59382411 (+)
LOC110532531 LOC106572482 coding downstream 122079 59386864 ~ 59393869 (+)
LOC110532532 LOC106572483 coding downstream 163733 59428518 ~ 59437957 (+)
LOC110532533 NA coding downstream 199452 59464237 ~ 59468766 (+)
G824814 NA non-coding upstream 37723 59224922 ~ 59225326 (+)
G824812 NA non-coding upstream 41047 59221635 ~ 59222002 (+)
G824772 NA non-coding upstream 95847 59166907 ~ 59167202 (+)
G824771 NA non-coding upstream 96506 59166339 ~ 59166543 (+)
G824858 NA non-coding downstream 37096 59301881 ~ 59302177 (+)
G824921 NA non-coding downstream 118313 59383098 ~ 59383402 (+)
G824934 NA non-coding downstream 148167 59412952 ~ 59413227 (+)
G824967 NA non-coding downstream 195565 59460350 ~ 59460837 (+)
ppdpfa LOC106572462 other upstream 234906 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 406350 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 578539 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 591798 58668090 ~ 58671251 (+)
G824936 NA other downstream 149362 59414147 ~ 59415013 (+)
G825484 NA other downstream 333244 59598029 ~ 59598970 (+)
G825749 NA other downstream 745224 60010009 ~ 60010425 (+)
G826505 NA other downstream 1181245 60446030 ~ 60446534 (+)

Expression


Co-expression Network