G825484


Basic Information

Item Value
gene id G825484
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59598029 ~ 59598970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU938660
tcccatctccaccaatcaggccttcatggtagagtggccaggtggAAGCCACTCACTGAAAGGCACCTAAaaaagactctgaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacatctggaggaaacctggcacaatccctacggtggagcatggtggtggcagaatcatggtatggggatgtttttcagtggcagggactgggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacttactccagagcactcaggacctcagactggggcaaaagttcaccttccaataggacaacgaacctaagcacacatccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtattatccagccagagccaggacttgaacccgatcgaacatttctggagaaacctgaaaatagctgtgcagcaacgctccccatccaaccggatatagcttgagaggatttgcagaaaAGAAtcagagaaactccccaaatacaggtgtgctaagcttgtagcgtcacccAAGTAGACAGTATGTAGTgggtgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatagtaagtcaatttgatatttctgtttttgtcttttacaaaaaaacatttgctttgtcatttatggggtattgtgtgtagatggatgaggaggaaaataacattttaatgcattttagaataatgctttAACTTTACAAAATGTTGGAAAAGTCAACACaaaacattacataatacagaaaTAACATCAATAGACAGGAACAGCTCAAGGTCTGAACTGCACAAATGTAAAATAACAATATAACGAAAATAAAAGGTTCTAATGACAGTTGCACACC

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU938660 True 942 TUCP 0.43 1 59598029 59598970

Neighbor

gene id symbol gene type direction distance location
LOC110532540 LOC106572487 coding upstream 2265 59581064 ~ 59595956 (+)
LOC110532538 LOC106572486 coding upstream 39947 59553907 ~ 59558082 (+)
LOC110532537 LOC106572506 coding upstream 62197 59531356 ~ 59535832 (+)
LOC110532535 LOC106572485 coding upstream 77658 59506303 ~ 59520371 (+)
LOC118966188 LOC106572505 coding upstream 106029 59488041 ~ 59492053 (+)
LOC110532541 spats2 coding downstream 3976 59602946 ~ 59635003 (+)
LOC110532542 ormdl2 coding downstream 101101 59700071 ~ 59703279 (+)
LOC110532545 cd63 coding downstream 115358 59714328 ~ 59734425 (+)
zgc:56699 LOC106572533 coding downstream 153502 59752472 ~ 59758243 (+)
LOC110532552 LOC106572526 coding downstream 270421 59869391 ~ 59902248 (+)
G825467 NA non-coding upstream 60634 59536779 ~ 59537395 (+)
G825466 NA non-coding upstream 67400 59530199 ~ 59530629 (+)
G825460 NA non-coding upstream 70539 59527246 ~ 59527490 (+)
G825506 NA non-coding downstream 42125 59641095 ~ 59641409 (+)
G825513 NA non-coding downstream 57608 59656578 ~ 59656791 (+)
G825526 NA non-coding downstream 76725 59675695 ~ 59676002 (+)
G825545 LOC106572491 non-coding downstream 110282 59709252 ~ 59709788 (+)
G825582 NA non-coding downstream 167275 59766245 ~ 59766737 (+)
G824936 NA other upstream 183016 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 215618 59374974 ~ 59382411 (+)
LOC118966079 NA other upstream 437833 59158581 ~ 59161748 (+)
ppdpfa LOC106572462 other upstream 569886 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 741330 58854845 ~ 58856718 (+)
G825749 NA other downstream 411039 60010009 ~ 60010425 (+)
G826505 NA other downstream 847060 60446030 ~ 60446534 (+)
G826653 NA other downstream 964110 60563080 ~ 60563397 (+)
G826751 NA other downstream 1062399 60661369 ~ 60661906 (+)
G827039 NA other downstream 1613491 61212461 ~ 61251238 (+)

Expression


Co-expression Network