G825545 (LOC106572491)


Basic Information

Item Value
gene id G825545
gene name LOC106572491
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59709252 ~ 59709788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU938729
TGGGCTTTACAGTGTATATTGCTACAGGGTCGATGGGTTTGATCTTGAAGCAGGTCTTTGGGCTGAACAGGCTGATGCTGAGGGTGGTTTCATTGGTCTGCTCATGCATTAGGTACTGCACCAGACCCCAGACACTGAAATGTTCTAGCTCCTGCAgcttctcctcatcctccacaaCAGTTACCTTCAGCTGTTTTGAGCTCCATACTCGAACCTGGATTCTTGTCCATGTTTCCTTCCAACCTGGGACAATGGGGTTGAGATAGCAGTAGTGATTTGACCCTGTTTTGGCAGACTCTTGGCCATCTTTGATATTGACTATGTTGATCTTAC

Function

NR:

description
nuclear envelope integral membrane protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU938729 True 333 lncRNA 0.47 2 59709252 59709788

Neighbor

gene id symbol gene type direction distance location
LOC110532542 ormdl2 coding upstream 5973 59700071 ~ 59703279 (+)
LOC110532541 spats2 coding upstream 74249 59602946 ~ 59635003 (+)
LOC110532540 LOC106572487 coding upstream 113488 59581064 ~ 59595956 (+)
LOC110532538 LOC106572486 coding upstream 151170 59553907 ~ 59558082 (+)
LOC110532537 LOC106572506 coding upstream 173420 59531356 ~ 59535832 (+)
LOC110532545 cd63 coding downstream 4540 59714328 ~ 59734425 (+)
zgc:56699 LOC106572533 coding downstream 42684 59752472 ~ 59758243 (+)
LOC110532552 LOC106572526 coding downstream 159603 59869391 ~ 59902248 (+)
LOC110532555 LOC106572529 coding downstream 213874 59923662 ~ 59926586 (+)
LOC110532559 racgap1 coding downstream 279873 59989661 ~ 59998443 (+)
G825526 NA non-coding upstream 33250 59675695 ~ 59676002 (+)
G825513 NA non-coding upstream 52461 59656578 ~ 59656791 (+)
G825506 NA non-coding upstream 67843 59641095 ~ 59641409 (+)
G825467 NA non-coding upstream 171857 59536779 ~ 59537395 (+)
G825582 NA non-coding downstream 56457 59766245 ~ 59766737 (+)
G825604 NA non-coding downstream 82736 59792524 ~ 59855410 (+)
G825640 NA non-coding downstream 119331 59829119 ~ 59832386 (+)
G825677 NA non-coding downstream 157334 59867122 ~ 59867829 (+)
G825697 NA non-coding downstream 174521 59884309 ~ 59971600 (+)
G825484 NA other upstream 110282 59598029 ~ 59598970 (+)
G824936 NA other upstream 294239 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 326841 59374974 ~ 59382411 (+)
LOC118966079 NA other upstream 549056 59158581 ~ 59161748 (+)
ppdpfa LOC106572462 other upstream 681109 59025174 ~ 59028152 (+)
G825749 NA other downstream 300221 60010009 ~ 60010425 (+)
G826505 NA other downstream 736242 60446030 ~ 60446534 (+)
G826653 NA other downstream 853292 60563080 ~ 60563397 (+)
G826751 NA other downstream 951581 60661369 ~ 60661906 (+)
G827039 NA other downstream 1502673 61212461 ~ 61251238 (+)

Expression


Co-expression Network