XLOC_027234 (copg2)


Basic Information

Item Value
gene id XLOC_027234
gene name copg2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15983541 ~ 15996191 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053645
ACCTCCGCCAGCTCACAACGTACGTCACACTAGTTGACGTGGAGGAAAAGAGCGTGAATGACTGTCTGATCATTTCGCTTACTGCTCTCAAACATTCCGCAAAATGATCAAGAAATTCGACAAGAAGGACGAGGAGTCTGGAAGTGGCTCAAACCCCTTTCAGCATTTGGAGAAGAGCGCTGTACTACAGGAGGCTCGGATCTTTAATGAGACGCCTATAAATCCAAGAAGATGTCTGCATATCCTGACCAAGATCATTTACCTGCTCAACCAGGGTGAGCATTTTGGAACCACAGAAGCCACTGAAGCTTTCTTTGCCATGACAAGGCTGTTCCAGTCTAATGATCAAACCCTGAGAAGAATGTGCTACCTGACCATAAAGGAGATGGCCAACATCTCAGAGGATGTGATCATTGTTACAAGCAGCTTGACAAAGGACATGACTGGCAAAGAGGACGTTTATAGAGGACCAGCAATCAGAGCTCTCTGCAGGATCACTGATACCACAATGTTGCAGGCTATTGAACGATACATGAAACAGGCCATTGTGGACAAAGTGCCCAGCGTCTCCAGCTCTGCTTTGGTTTCATCACTAcatATGGTGAAGATGAGCTTTGATGTTGTAAAACGCTGGGTCAATGAAGCGCAGGAGGCGGCATCGAGTGATAACATTATGGTGCAGTATCATGCTCTGGGTCTTTTGTACCACCTGAGGAAGAATGATCGTCTCGCTGTGACCAAGATGCTTAATAAATTCACCAAATCTGGTCTGAAGTCTCCGTTTGCATACTGCATGATGATTCGCATTGCCAGTAAACTGCTGGAGGAGACGGAGGGAGGGCATGACAGCCCACTGTTTGACTTCATTGAGAGCTGCCTGAGGAATAAACATGAGATGGTTGTTTATGAAGCAGCCTCTGCCATCGTCCACATGCCCAACTGTACTGCCCGTGAGCTGGCTCCTGCTGTATCTGTTCTCCAGCTGTTCTGCAGCTCTCCCAAAGCAGCACTCCGATATGCAGCAGTGCGGACTCTTAATAAGGTGGCGATGAAGCACCCGTCAGCAGTGACCGCATGCAACCTGGACCTGGAGAATCTGATCACTGACTCCAACCGCAGCATCGCCACCCTGGCCATCACCACCCTGCTGAAGACCGGCAGCGAGAGCAGTGTAGACCGCCTCATGAAGCAGATCTCCTCCTTCGTCTCCGAGATCTCAGATGAGTTCAAGGTGGTTGTGGTCCAGGCCATCAGTGCTCTGTGCCAGAAGTATCCGAGAAAGCACAGCGTAATGATGAACTTTCTCTCAAACATGCTGCGAGACGATGGTGGCTTCGAGTACAAGAGGGCCATTGTAGACTGCATCATCAGCATCATCGAGGAAAACCCGGAGAGTAAAGAAACCGGTCTGGCCCACCTGTGCGAGTTCATCGAGGACTGCGAGCACACCGTCCTGGCCACTAAAATTCTCCACTTGCTGGGGAAAGAGGGTCCTCGTACCCCTACACCCTCCAAATACATCCGCTTCATCTTCAACCGTGTGGTGCTGGAGAGCGAAGCGGTTCGGGCCGCTGCTGTTAGCGCCTTGGCCAAGTTTGGGGCTCAAAACGATGACCTGCTGCCAAGCGTCTTGGTCCTGATGCAGAGGTGTATGATGGACAGTGATGATGAAGTGAGAGATAGAGCCACATTCTACATGAACGTCCTTCAGCAGAAGCAGAAGGCCCTGAATGCTGCTTACATCTTCAATGGTCTGTCTGTATCAGTTCTCGGACTGGAGAAATCCCTCCACCAGTACACTCTGGAGCCCTCCGAGAAGCCATTTGACATGAAGACAGTTCCCTTGGCTACTGCGCCCATTACTGAACACAAAACAGaaatTGCTCCTGTGGCAACAAGCAAACTACCCGAAAAGCTTGCGCCTTCACGCCAAGACATTTACCAAGAGCAACTTTCAGCCATCCCAGAATTCCAGGGCCTGGGTCCCCTGTTCAAGTCTTCCGAGCCGGTGCAGTTAACAGAAGCAGAGACGGAGTATGTGGTGCGCTGCATCAAACATACTTTCGCgaatcacatgatctttcagtTCGACTGCACCAACACGCTGAACGACCAGCTGCTGCAGAAGGTTCTGGTCCAGATGGAACCATCGGAGTCATACGAAGTGCTCCATTACGTACCTGCAGCCAATCTTCCCTACAGCCAGCCCGGCTCCTGCTACAGCCTCGTCCGGTTACCGGAGGATGACCCCACCGCAGtcTCTTGCACATTCAGCTGTACAATGAAATATCTGGTGCGGGATTGTGATCCTAACACAGGAGAGCCTGATGATGACGGTTACGATGATGAATATGTGCTGGAAGATTTAGAGGTGACGGTCGCCGACCACATACAGAAAGTGCTCAAACCGAACTTCGCTGCAGCATGGGACGAGGTCGGAGACGAGTGTGAGAAGGAAGAGACGTTTGCTCTGGCCACAGTCAGAACTCTAGATGAGGCAGTAAATAACATCGTCAGCTTCTTGGGCATGCAGCCTTGTGAGCGTTCAGACAAAGTTCCGGAAAACAAGAACTCGCATGTTCTCTTCCTAGCAGGTGTGTTTCGAGGAGGTCATGATGTGTTGGTGAGGGCTCGTTTGGCTCTGGCTGATGGCGTCACTATACAGGTGACTGTCAGGAGCACAGATGACAACGTGGTGGACGTCATCCTAGCATCTGTGGGCTAAACAAGCGATGTTATGATGCCAATCAGTCTCAGTCATTGTCCTTTTATATATGTATCTACATAGAAGCTCTATAATATTTCTCATCACCATCCTCTGAGACATCCTGTTTCTGCATTAAATCTCTTTCGGAGATGTTTCTAAATTATGTTGTGCCACTTTAATTCAAGAGATCTTATGATAATTCCCTCTTTGGCATTTGATGGCAGTACTTTTcatttatcaataataaaaacagcCCCAAAGAGTACCAAA
>TCONS_00053646
GTTCTCCAGCTGTTCTGCAGCTCTCCCAAAGCAGCACTCCGATATGCAGCAGTGCGGACTCTTAATAAGGTGGCTTCGAGTACAAGAGGGCCATTGTAGACTGCATCATCAGCATCATCGAGGAAAACCCGGAGAGTAAAGAAACCGGTCTGGCCCACCTGTGCGAGTTCATCGAGGACTGCGAGCACACCGTCCTGGCCACTAAAATTCTCCACTTGCTGGGGAAAGAGGGTCCTCGTACCCCTACACCCTCCAAATACATCCGCTTCATCTTCAACCGTGTGGTGCTGGAGAGCGAAGCGGTTCGGGCCGCTGCTGTTAGCGCCTTGGCCAAGTTTGGGGCTCAAAACGATGACCTGCTGCCAAGCGTCTTGGTCCTGATGCAGAGGTGTATGATGGACAGTGATGATGAAGTGAGAGATAGAGCCACATTCTACATGAACGTCCTTCAGCAGAAGCAGAAGGCCCTGAATGCTGCTTACATCTTCAATG

Function

symbol description
copg2 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0009306 protein secretion biological_process
GO:0072384 organelle transport along microtubule biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000208-8 Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2).

Ensembl:

ensembl_id ENSDARG00000034823

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053645 False 2977 mRNA 0.49 23 15983541 15996191
TCONS_00053646 True 492 processed_transcript 0.53 4 15988387 15991090

Neighbor

gene id symbol gene type direction distance location
XLOC_027233 ucn3l coding upstream 2002 15981096 ~ 15981539 (+)
XLOC_027232 si:dkey-117n7.5 coding upstream 8631 15968483 ~ 15974910 (+)
XLOC_027229 col7a1l coding upstream 17281 15889437 ~ 15966260 (+)
XLOC_027231 si:dkey-117n7.3 coding upstream 38674 15944245 ~ 15944867 (+)
XLOC_027230 si:dkey-117n7.2 coding upstream 39694 15942075 ~ 15943847 (+)
XLOC_027235 CR749763.5 coding downstream 5047 16001238 ~ 16004425 (+)
XLOC_027236 NA coding downstream 12032 16008223 ~ 16023375 (+)
XLOC_027237 NA coding downstream 40977 16037168 ~ 16073706 (+)
XLOC_027238 NA coding downstream 194135 16190326 ~ 16211867 (+)
XLOC_027239 NA coding downstream 312885 16309076 ~ 16313899 (+)
XLOC_027228 NA non-coding upstream 102397 15869212 ~ 15881144 (+)
XLOC_027225 NA non-coding upstream 742828 15183505 ~ 15240713 (+)
XLOC_027224 NA non-coding upstream 869074 15104694 ~ 15114467 (+)
XLOC_027223 NA non-coding upstream 907489 15071474 ~ 15076052 (+)
XLOC_027214 NA non-coding upstream 1212956 14767982 ~ 14770585 (+)

Expression


Co-expression Network