XLOC_027238


Basic Information

Item Value
gene id XLOC_027238
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16190326 ~ 16211867 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057699
GAAAAAGTCAGACTGACCCGGCAGAGCGAAGTGGAGTTGAAAAAGTAGGAACCTGATGTGCACATGCAGCAAAAACAAAGAATGCCTGGTGTCAAGTGCTCCAAGTGGCCTGAGAAGGGAACGAGAGGGACAGACGGGCAGCTGTTGGGAGTTGCCCACTTCTGATGCGGAGCTCCAGGTGGTGCGAAAGACAGCTGTGGAAACATTGAGGGAAATCCCACTGGCTTTTAGGGAGATTTCCCTCCAAACTCTTCTCAAAGACAAACACTGCGCTGCTGGACTCGTTACGAAATGAGTGTTCCGCATGAGTCACATGAAGAGCCGGGCATGTGTCAGAATGGAGAGCTGACCTTTACAAGAGTGTGAGCTAATTAACAACAACTGTCAGAGACAATGATGGATGAAGAGCAACATTTCTGTCGCTAAATAACGTGAGGAATTCGGGTTATGCTGAGGTAAGCAGTTCCCTTGCATGGCGGCGACCCTGACAAACCAGATTCTTGGTGGAGAatgtaatataaacacacacgtGCAGACAGTTTTGAAATTCAGAGCTTGGCCATGCGAGATACAACAAGCTCGATAAGGAGATAAGAGTGGAATGGTGGAAAATTTTCGACCACTTTAAAAGGACAATAGATTAAAGAGGTCATTCGGTTGGAGAAATGTCAATGTACACATTATTTATACATCAGCagatataattaatttttaaataaacaaataaataaatatgtaagatTGTAAATGATGAAACTGCCCCCAAT
>TCONS_00057698
GAAAAAGTCAGACTGACCCGGCAGAGCGAAGTGGAGTTGAAAAAGAACCTGATGTGCACATGCAGCAAAAACAAAGAATGCCTGGTGTCAAGTGCTCCAAGTGGCCTGAGAAGGGAACGAGAGGGACAGACGGGCAGCTGTTGGGAGTTGCCCACTTCTGATGCGGAGCTCCAGGTGGTGCGAAAGACAGCTGTGGAAACATTGAGGGAAATCCCACTGGCTTTTAGGGAGATTTCCCTCCAAACTCTTCTCAAAGACAAACACTGCGCTGCTGGACTCGTTACGAAATGAGTGTTCCGCATGAGTCACATGAAGAGCCGGGCATGTGTCAGAATGGAGAGCTGACCTTTACAAGAGTGTGAGCTAATTAACAACAACTGTCAGAGACAATGATGGATGAAGAGCAACATTTCTGTCGCTAAATAACGTGAGGAATTCGGGTTATGCTGAGGTAAGCAGTTCCCTTGCATGGCGGCGACCCTGACAAACCAGATTCTTGGTGGAGAatgtaatataaacacacacgtGCAGACAGTTTTGAAATTCAGAGCTTGGCCATGCGAGATACAACAAGCTCGATAAGGAGATAAGAGTGGAATGGTGGAAAATTTTCGACCACTTTAAAAGGACAATAGATTAAAGAGGTCATTCGGTTGGAGAAATGTCAATGTACACATTATTTATACATCAGCagatataattaatttttaaataaacaaataaataaatatgtaagatTGTAAATGATGAAACTGCCCCCAAT
>TCONS_00057700
GGAAACTTCAGGCGCAACGCACAACCTCCACTCAGCACAGCAGGACTAAAATCAGCCCGGTGGACGAATTCAATCACCACTCTAATGATATGCATGGAAATTCAGTCCGCCAGGCCGACTTTGAATAAACTCCTCTAACAAAACCGTTCCTGACCCAAGAGTCTGCTATTAGCGATTAGCGAAATTGAGAGATCGAAGGAAGCGCCTCAAAGCAAGTAACATCATGACCAGCAGCACTGGCAACGGGTGTGGAAATGACATCACCACTAGTCGATCTGCCACCAGGAACCTGATGTGCACATGCAGCAAAAACAAAGAATGCCTGGTGTCAAGTGCTCCAAGTGGCCTGAGAAGGGAACGAGAGGGACAGACGGGCAGCTGTTGGGAGTTGCCCACTTCTGATGCGGAGCTCCAGGTGGTGCGAAAGACAGCTGTGGAAACATTGAGGGAAATCCCACTGGCTTTTAGGGAGATTTCCCTCCAAACTCTTCTCAAAGACAAACACTGCGCTGCTGGACTCGTTACGAAATGAGTGTTCCGCATGAGTCACATGAAGAGCCGGGCATGTGTCAGAATGGAGAGCTGACCTTTACAAGAGTGTGAGCTAATTAACAACAACTGTCAGAGACAATGATGGATGAAGAGCAACATTTCTGTCGCTAAATAACGTGAGGAATTCGGGTTATGCTGAGGTAAGCAGTTCCCTTGCATGGCGGCGACCCTGACAAACCAGATTCTTGGTGGAGAatgtaatataaacacacacgtGCAGACAGTTTTGAAATTCAGAGCTTGGCCATGCGAGATACAACAAGCTCGATAAGGAGATAAGAGTGGAATGGTGGAAAATTTTCGACCACTTTAAAAGGACAATAGATTAAAGAGGTCATTCGGTTGGAGAAATGTCAATGTACACATTATTTATACATCAGCagatataattaatttttaaataaacaaataaataaatatgtaagatTGTAAATGATGAAACTGCCCCCAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057699 False 767 lncRNA 0.44 2 16190326 16211867
TCONS_00057698 False 763 lncRNA 0.44 2 16190326 16211867
TCONS_00057700 True 1004 lncRNA 0.45 2 16193035 16211867

Neighbor

gene id symbol gene type direction distance location
XLOC_027237 NA coding upstream 116620 16037168 ~ 16073706 (+)
XLOC_027236 NA coding upstream 166951 16008223 ~ 16023375 (+)
XLOC_027235 CR749763.5 coding upstream 185901 16001238 ~ 16004425 (+)
XLOC_027234 copg2 coding upstream 194135 15983541 ~ 15996191 (+)
XLOC_027233 ucn3l coding upstream 208787 15981096 ~ 15981539 (+)
XLOC_027239 NA coding downstream 97209 16309076 ~ 16313899 (+)
XLOC_027240 si:dkeyp-38g8.5 coding downstream 103825 16315692 ~ 16319762 (+)
XLOC_027241 BX322608.1 coding downstream 112103 16323970 ~ 16347126 (+)
XLOC_027242 NA coding downstream 162402 16374269 ~ 16374692 (+)
XLOC_027243 NA coding downstream 323391 16535258 ~ 16538962 (+)
XLOC_027228 NA non-coding upstream 309182 15869212 ~ 15881144 (+)
XLOC_027225 NA non-coding upstream 949613 15183505 ~ 15240713 (+)
XLOC_027246 NA non-coding downstream 538389 16750256 ~ 16758036 (+)
XLOC_027247 NA non-coding downstream 540494 16752361 ~ 16753296 (+)

Expression


Co-expression Network